User: greyman

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greyman30
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30
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14 hours ago
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Posts by greyman

<prev • 12 results • page 1 of 2 • next >
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... Thanks genomax!! i would like to work on all data in once but it seems like i have to separate them into batch ...start searching about dual socket workstation like HP Z820 Tower Workstation 16-Core E5-2670 (16 cores, hard disk storage15TB, RAM32 GB).... and looks like i ll have to add more RAM to ...
written 3 days ago by greyman30
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... They dont own a HPC but they are interested to do modification to a Lenovo desktop that i m currently using. The 7k dollar would be invested in the modification, however, i ll request for more fund if buying a new desktop is necessary. They are expecting to see some fruitful output from the 2.6TB be ...
written 3 days ago by greyman30
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... Hi, thank you so much for your reply and i was asked to submit a grant proposal regarding CPU, RAM and HDD and probably a desktop in two days time. As the desktop gonna be placed at my personal workbench, with budget 7000 dollar, would it be possible to hear some advice from you in getting these har ...
written 3 days ago by greyman30
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Comment: C: How to get quality output for exome assembly ?
... thank you so much! I have no much information about adaptor sequence, only know that it generated by Hiseq sequencing. Would you think Trimmomatic using ILLUMINACLIP: Truseq gonna work? Would u recommend to try on BBDUK? Will input the BAM into genome viewer. There are @SQ in my BAM , how would y ...
written 5 days ago by greyman30
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... thank you, still learning... ...
written 5 days ago by greyman30
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Comment: C: How to get quality output for exome assembly ?
... thank you, just change it ...
written 5 days ago by greyman30
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How to get quality output for exome assembly ?
... Hi all I am very new in exome seqeucing for SNP variants calling. I got my overall alignment rate of 97.02%. Can Trimmomatic do exome trimming for Hiseq PE? i didnt have information about the sequencing cycle.... Also, from fastqc reports that my per base sequence quality is fine but the "per base ...
exome samtools sequencing written 5 days ago by greyman30
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... Thank you, it is population disease data ...
written 8 days ago by greyman30
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... Thanks for the reply, will contact ITS asap! ...
written 8 days ago by greyman30
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Comment: C: How to work with 2.6 TB genome data which is deposited in the server?
... you are right thank you, someone use du -sh to tell me the file size wondering if it could be wrong ...
written 9 days ago by greyman30

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