User: mrsmith

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mrsmith10
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m******@willamette.edu

Posts by mrsmith

<prev • 9 results • page 1 of 1 • next >
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Comment: C: BBMap for loop issue
... That worked perfectly! Thank you both so much! I appreciate the help you do in this community so much! ...
written 23 days ago by mrsmith10
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Comment: C: BBMap for loop issue
... Thanks for that suggestion. That made me realize what the real issue was at least! ...
written 23 days ago by mrsmith10
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Comment: C: BBMap for loop issue
... I am not sure what I am doing incorrectly, the for loop works, I previously though it was "stuck" on the first bin, SRR4101185.maxbin.008.fasta. It turns out, I think it might be iterating each bin through every single ${read} file (about 300 of them), which is not what I want either! It just keeps ...
written 23 days ago by mrsmith10
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BBMap for loop issue
... This question may be better suited for another forum, in which case I am super sorry! I am new to bioinformatics, but I could really use some help in this moment!! I have struggled to write this for loop to iterate through two text files, I made both of the. The first text file "new-bins_list.txt" ...
genome written 23 days ago by mrsmith10 • updated 23 days ago by genomax68k
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Comment: C: NCBI Accession Number to Taxonomy ID
... That worked really well, thanks a lot! I appreciate the help so much! ...
written 6 months ago by mrsmith10
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Comment: C: NCBI Accession Number to Taxonomy ID
... That worked fantastically! Thanks for your help, I really appreciate it! ...
written 6 months ago by mrsmith10
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Comment: C: NCBI Accession Number to Taxonomy ID
... Thanks so much for your help! I may not have been detailed enough in my initial question. My current file looks like this: BC04 BC05 BC16 BC17 BC28 BC29 BC40 BC41 BC52 BC64 BC76 BC88 MG576168.1 0 0 0 0 0 0 0 ...
written 6 months ago by mrsmith10 • updated 6 months ago by genomax68k
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NCBI Accession Number to Taxonomy ID
... I am trying to convert a long list of NCBI accession numbers from the nt database into taxonomy ID so that I can get lineage information from a large file of 16S blast results. I would just rerun the blast and change the output format, but it took SOOO long to run these blasts on 12 samples. Additio ...
ncbi 16s blast written 6 months ago by mrsmith10 • updated 11 weeks ago by Ming30
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Parsing a FASTQ File
... I am relatively new to the field, and I could desperately use some help. I am trying to process a FASTQ File using [DADA2][1], but I really would like to separate all of the forward and reverse reads for each sample out of a very large FASTQ file. The file was initially large FASTA file, and I hav ...
dada2 written 11 months ago by mrsmith10 • updated 11 months ago by Dattatray Mongad290

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