User: mrsmith

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mrsmith40
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Last seen:
12 months ago
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1 year, 10 months ago
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m******@willamette.edu

Posts by mrsmith

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Comment: C: BBMap for loop issue
... That worked perfectly! Thank you both so much! I appreciate the help you do in this community so much! ...
written 12 months ago by mrsmith40
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Comment: C: BBMap for loop issue
... Thanks for that suggestion. That made me realize what the real issue was at least! ...
written 12 months ago by mrsmith40
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Comment: C: BBMap for loop issue
... I am not sure what I am doing incorrectly, the for loop works, I previously though it was "stuck" on the first bin, SRR4101185.maxbin.008.fasta. It turns out, I think it might be iterating each bin through every single ${read} file (about 300 of them), which is not what I want either! It just keeps ...
written 12 months ago by mrsmith40
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BBMap for loop issue
... This question may be better suited for another forum, in which case I am super sorry! I am new to bioinformatics, but I could really use some help in this moment!! I have struggled to write this for loop to iterate through two text files, I made both of the. The first text file "new-bins_list.txt" ...
genome written 12 months ago by mrsmith40 • updated 12 months ago by genomax83k
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Comment: C: NCBI Accession Number to Taxonomy ID
... That worked really well, thanks a lot! I appreciate the help so much! ...
written 17 months ago by mrsmith40
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Comment: C: NCBI Accession Number to Taxonomy ID
... That worked fantastically! Thanks for your help, I really appreciate it! ...
written 17 months ago by mrsmith40
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Comment: C: NCBI Accession Number to Taxonomy ID
... Thanks so much for your help! I may not have been detailed enough in my initial question. My current file looks like this: BC04 BC05 BC16 BC17 BC28 BC29 BC40 BC41 BC52 BC64 BC76 BC88 MG576168.1 0 0 0 0 0 0 0 ...
written 17 months ago by mrsmith40 • updated 17 months ago by genomax83k
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NCBI Accession Number to Taxonomy ID
... I am trying to convert a long list of NCBI accession numbers from the nt database into taxonomy ID so that I can get lineage information from a large file of 16S blast results. I would just rerun the blast and change the output format, but it took SOOO long to run these blasts on 12 samples. Additio ...
ncbi 16s blast written 17 months ago by mrsmith40 • updated 14 months ago by Ming50
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Parsing a FASTQ File
... I am relatively new to the field, and I could desperately use some help. I am trying to process a FASTQ File using [DADA2][1], but I really would like to separate all of the forward and reverse reads for each sample out of a very large FASTQ file. The file was initially large FASTA file, and I hav ...
dada2 written 22 months ago by mrsmith40 • updated 22 months ago by Dattatray Mongad350

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