User: ever_wudi

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ever_wudi10
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Posts by ever_wudi

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Comment: C: Generating FPKM matrix accross all samples after stringtie
... Thanks ATpoint, the commands worked. I am very new to R and RNA-seq, did try to search for solutions before but didn't find a satisfactory way. Thanks for the help. ...
written 1 hour ago by ever_wudi10
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Comment: C: Generating FPKM matrix accross all samples after stringtie
... Thanks for the detailed steps, manuel.belmadani! I really appreciate your help. ...
written 1 hour ago by ever_wudi10
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Generating FPKM matrix accross all samples after stringtie
... Hi, I finished the "stringtie --merge" step and used "stringtie -e -B -G" to reestimate fpkm for each sample and generated the ballgown folder. Now I am trying to get FPKM for all genes and across all samples into a matrix. I know there is a prepDE.py script, but it generates gene/transcript coun ...
rna-seq written 8 days ago by ever_wudi10 • updated 8 days ago by manuel.belmadani40

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