User: AsoInfo

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AsoInfo210
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210
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Location:
Bonn, Germany
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3 hours ago
Joined:
4 years, 12 months ago
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Posts by AsoInfo

<prev • 46 results • page 1 of 5 • next >
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Comment: C: A code for splitting FASTA file, No output is written for the file
... No this was not an assignment. Just a small project stuff. ...
written 1 day ago by AsoInfo210
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Comment: C: A code for splitting FASTA file, No output is written for the file
... I modified the code and it worked perfectly, thanks for your help. ...
written 3 days ago by AsoInfo210
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Comment: C: A code for splitting FASTA file, No output is written for the file
... I modified the code and it worked.... ...
written 3 days ago by AsoInfo210
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Comment: C: A code for splitting FASTA file, No output is written for the file
... I have tried it and it worked perfectly...Thanks! ...
written 3 days ago by AsoInfo210
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A code for splitting FASTA file, No output is written for the file
... I have written code for splitting FASTA into desired number of sequences and desired number of files. But it doesn't write output for the second file or the last file. I couldn't figure it out. The code is as follows: file_open=open("sequence.txt","r") # Input file count_file=2 # Number of ...
python splitting fasta written 4 days ago by AsoInfo210 • updated 3 days ago by a.zielezinski6.6k
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Comment: C: Arranging header in nr database via Python (Unable to input multiple files)
... Thanks for the comments! I edited my script already based on the comments and now the script is working fine. ...
written 12 days ago by AsoInfo210
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Arranging header in nr database via Python (Unable to input multiple files)
... Hi, I want to take input file after file. But for some reasons, it just take input of only one file not the other files. (sys.argv is not working) A small example how I am using this code: import sys from sys import argv with open(sys.argv[1], 'r') as f: contents = f.read ...
python nr database sys.argv written 12 days ago by AsoInfo210
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Comment: C: Problem When Downloading Large Number Of Sequences From Genbank
... Did the code work for you? Because for me, the code is unable to retrieve sequences after 3000 accession ids. ...
written 14 days ago by AsoInfo210
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Comment: C: Problem When Downloading Large Number Of Sequences From Genbank
... I have tried this code and it is giving me an Internal server error. Getting list of GIs for term=Metazoa[Organism] ... Downloading 22343398 entries from NCBI protein database in batches of 1000 entries... Traceback (most recent call last): File "biopython.py", line 26, in ...
written 15 days ago by AsoInfo210
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How to download tsa sequences from BioProject ID and saving it in fasta format?
... Hi, I want to download sequences of TSA by the specific BioProject id and save it seperately. I am using following command: esearch -db nuccore -query "381307[BioProject] AND tsa master[prop]" | elink -target nuccore -name nuccore_nuccore_mstr2mbr | efetch -format fasta I would like to sav ...
fasta nucleotide tsa written 22 days ago by AsoInfo210

Latest awards to AsoInfo

Appreciated 3.6 years ago, created a post with more than 5 votes. For A: Download Pdb Structures Containing Only Helices
Great Question 3.6 years ago, created a question with more than 5,000 views. For Haplotype Frequency Calculation
Popular Question 3.6 years ago, created a question with more than 1,000 views. For How To Ignore Pseudogenes Or Mirna During Aligning Using Tophat
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Haplotype Frequency Calculation
Popular Question 3.6 years ago, created a question with more than 1,000 views. For Normal Rna-Seq Data
Popular Question 3.6 years ago, created a question with more than 1,000 views. For What Is The Directory Structure Required To Run Tophat Fusion?
Supporter 3.6 years ago, voted at least 25 times.
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Evaluation Of Protein Model Based On Homology Modelling
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Download Pdb Structures Containing Only Helices

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