User: AsoInfo

gravatar for AsoInfo
AsoInfo220
Reputation:
220
Status:
Trusted
Location:
Bonn, Germany
Last seen:
2 weeks, 1 day ago
Joined:
5 years ago
Email:
a***********@gmail.com

Posts by AsoInfo

<prev • 47 results • page 1 of 5 • next >
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Comment: C: Scientific Names In Blast Output And Databases
... Hi, I am facing the same problem. Did anyone firgure it out? *EDITED:* It worked. I forgot to provide the input of "-taxid_map tax_id" in makeblastdb command. ...
written 17 days ago by AsoInfo220
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Comment: C: A code for splitting FASTA file, No output is written for the file
... No this was not an assignment. Just a small project stuff. ...
written 4 weeks ago by AsoInfo220
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Comment: C: A code for splitting FASTA file, No output is written for the file
... I modified the code and it worked perfectly, thanks for your help. ...
written 5 weeks ago by AsoInfo220
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Comment: C: A code for splitting FASTA file, No output is written for the file
... I modified the code and it worked.... ...
written 5 weeks ago by AsoInfo220
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Comment: C: A code for splitting FASTA file, No output is written for the file
... I have tried it and it worked perfectly...Thanks! ...
written 5 weeks ago by AsoInfo220
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8 follow
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A code for splitting FASTA file, No output is written for the file
... I have written code for splitting FASTA into desired number of sequences and desired number of files. But it doesn't write output for the second file or the last file. I couldn't figure it out. The code is as follows: file_open=open("sequence.txt","r") # Input file count_file=2 # Number of ...
python splitting fasta written 5 weeks ago by AsoInfo220 • updated 5 weeks ago by a.zielezinski6.9k
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Comment: C: Arranging header in nr database via Python (Unable to input multiple files)
... Thanks for the comments! I edited my script already based on the comments and now the script is working fine. ...
written 6 weeks ago by AsoInfo220
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Arranging header in nr database via Python (Unable to input multiple files)
... Hi, I want to take input file after file. But for some reasons, it just take input of only one file not the other files. (sys.argv is not working) A small example how I am using this code: import sys from sys import argv with open(sys.argv[1], 'r') as f: contents = f.read ...
python nr database sys.argv written 6 weeks ago by AsoInfo220
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Comment: C: Problem When Downloading Large Number Of Sequences From Genbank
... Did the code work for you? Because for me, the code is unable to retrieve sequences after 3000 accession ids. ...
written 6 weeks ago by AsoInfo220
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Comment: C: Problem When Downloading Large Number Of Sequences From Genbank
... I have tried this code and it is giving me an Internal server error. Getting list of GIs for term=Metazoa[Organism] ... Downloading 22343398 entries from NCBI protein database in batches of 1000 entries... Traceback (most recent call last): File "biopython.py", line 26, in ...
written 6 weeks ago by AsoInfo220

Latest awards to AsoInfo

Appreciated 3.7 years ago, created a post with more than 5 votes. For A: Download Pdb Structures Containing Only Helices
Great Question 3.7 years ago, created a question with more than 5,000 views. For Haplotype Frequency Calculation
Popular Question 3.7 years ago, created a question with more than 1,000 views. For How To Ignore Pseudogenes Or Mirna During Aligning Using Tophat
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Haplotype Frequency Calculation
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Normal Rna-Seq Data
Popular Question 3.7 years ago, created a question with more than 1,000 views. For What Is The Directory Structure Required To Run Tophat Fusion?
Supporter 3.7 years ago, voted at least 25 times.
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Evaluation Of Protein Model Based On Homology Modelling
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Download Pdb Structures Containing Only Helices

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