User: philousap10

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Posts by philousap10

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ABySS min = 500 ; how to change it
... Hello folks! I have done my de novo assembly using ABySS. I am expecting small contigs but abyss-pe has a default parameter: min length of 500. How can I change that to 200 pb, please? Merci! ...
de novo assembly abyss sequencing written 6 days ago by philousap100
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Comment: C: ABySS assembly: got unitig instead of contig
... @Carambakaracho Thanks for your reply! I found it... That happens when something goes wrong during the assembly. Indeed, i got a **error warning** during the assembly. I re-run my command fixing the mistake and it worked perfectly! Thank you! ...
written 7 days ago by philousap100
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ABySS assembly: got unitig instead of contig
... Hello! I have run ABySS (abyss-pe) command to assemble a de novo genome. I got only unitigs.fa file and not a contig.fa file. Is it normal? Thank you commad: abyss-pe k=30 name=AA lib='MI.M03992_0274.001.BioOHT_59.AA_R2_Q20HL50 MI.M03992_0274.001.BioOHT_11.AA_R1_Q20HL50' \ MI.M03992_0274.001.Bi ...
assembly written 7 days ago by philousap100

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