User: volatic

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volatic0
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Posts by volatic

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Filtering out of both read pairs from BAM file if any of the two align within interval
... Dear all, I have a really basic question regarding how to filter out rRNA reads from my paired end RNA-seq data. Essentially I would like to filter out any read pair aligning within a bed file of rRNA coordinates, which I am doing using "bedtools intersect" with the -v flag. This works fine and I g ...
rna-seq written 24 months ago by volatic0 • updated 24 months ago by Pierre Lindenbaum134k
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Faster processing of paired end FASTQ files
... Hi all! I was wondering whether anyone would have any insights into how to make the following python script faster. I need to access a set of paired end FASTQ files, and sort the reads into three distinct files depending on which adaptor sequence is present (or whether none of them is present). How ...
sequence alignment rna-seq written 2.6 years ago by volatic0 • updated 2.6 years ago by swbarnes29.6k

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