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Posts by volatic
... Dear all, I have a really basic question regarding how to filter out rRNA reads from my paired end RNA-seq data. Essentially I would like to filter out any read pair aligning within a bed file of rRNA coordinates, which I am doing using "bedtools intersect" with the -v flag. This works fine and I g ...
... Hi all! I was wondering whether anyone would have any insights into how to make the following python script faster. I need to access a set of paired end FASTQ files, and sort the reads into three distinct files depending on which adaptor sequence is present (or whether none of them is present). How ...
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