User: starick.marick

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Posts by starick.marick

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Comment: C: How to perform edgeR based on serial paired samples? (model.matrix design)
... Hi guys, I have some questions about model.matrix design for paired samples My data: samples collected longitudinally from 8 individuals treated from day 1 to day 17, DAY 0 is the control (no treatment) #Model matrix subject <- factor(c(rep(1:8,3), rep(5:8,6))) timepoint <- fact ...
written 19 days ago by starick.marick0
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Comment: A: Clarity for proper design model matrix with paired sample analysis
... Hi. I need to perform DGE between paired samples overtine. Did you reach a conclusion about the best model matrix? `design <- model.matrix(~0+Tissue+Subject)` or `design <- model.matrix(~Tissue+Subject)`? I checked the Section 3.4.1 (Paired samples) of the edgeR user's guide package and it ind ...
written 23 days ago by starick.marick0

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