User: b.verhagen

gravatar for b.verhagen
b.verhagen0
Reputation:
0
Status:
New User
Last seen:
3 days, 18 hours ago
Joined:
4 months, 3 weeks ago
Email:
b*********@hubrecht.eu

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by b.verhagen

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
106
views
1
answers
Comment: A: STAR Create Custom Refence Genome
... Now I wrote the following script (script.sh): #!/bin/bash /home/hub_tanenbaum/bverhagen /STAR/source/STAR --runMode genomeGenerate –genomeDir /hpc/hub_tanenbaum/Bram/ --genomeFastaFiles /hpc/hub_tanenbaum/Bram/sequence.fa And submitted it with the following command: qsub -q all.q -l ...
written 7 days ago by b.verhagen0 • updated 7 days ago by genomax59k
0
votes
1
answer
106
views
1
answers
Comment: C: STAR Create Custom Refence Genome
... I am running the script on a HPC server using a mobile terminal (5GB RAM on server). The library is not very big though, roughly 8000 sequences. ...
written 8 days ago by b.verhagen0
0
votes
1
answer
106
views
1
answers
Comment: C: STAR Create Custom Refence Genome
... Thanks, However after changing this, I obtain the following: Dec 04 14:43:26 ... starting to generate Genome files terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc Aborted ...
written 8 days ago by b.verhagen0
2
votes
1
answer
106
views
1
answer
STAR Create Custom Refence Genome
... Dear all, I want to use STAR to align my reads to a small reference genome (~12.500 UTRs). Although I have created a .fa-file of my library STAR is not able to generate a genome, as it is unable to read the file. I was wondering if anyone else has experienced the same problem? Or whether anyone ha ...
star rna-seq written 8 days ago by b.verhagen0
0
votes
0
answers
110
views
0
answers
RCAS Motif Discovery
... Hi all, I am trying to discover whether certain RNA molecules contain a motif. I am currently using the RCAS Package in R. Although, I do not have a problem with identifying motifs in the coding sequence, I, so far, have not been able to unravel any sequence motifs in the UTRs. When running runM ...
motif discovery rna written 4 months ago by b.verhagen0 • updated 12 weeks ago by Biostar ♦♦ 20

Latest awards to b.verhagen

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1604 users visited in the last hour