User: quokka

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quokka10
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5 months, 1 week ago
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10 months, 3 weeks ago
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m************@hotmail.com

Posts by quokka

<prev • 5 results • page 1 of 1 • next >
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Comment: A: ASCIIGenome: Text Only Genome Viewer!
... This really is a great viewer I must say! ...
written 7 months ago by quokka10
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Comment: C: hHow to use samtools tview goto with long reference sequence name
... Ah. Excellent. Not so obvious then. Thanks! ...
written 8 months ago by quokka10
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How to use samtools tview goto with long reference sequence name
... I'm sorry if the answer to this is blatantly obvious... I'm trying to jump to a sequence region in samtools tview with the (g)oto command. The problem is I can't enter the full command due to size restrictions of the input section. I want to enter: Goto: d62ff96e-317e-46d3-92b5-f5a4b329694f:3598 ...
samtools goto reference tview written 8 months ago by quokka10 • updated 7 months ago by John Marshall1.5k
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Comment: C: Opinion on FastQC output for HiSeq 4000 PE sequencing run
... Ok. Thanks Igor. My first time with 150bp reads (and HiSeq 4000) so its good to get an idea on whats normal. Appreciate your insights. I was a bit curious about the sequence bias at the 5' end because our library preparation didn't involve the use of transposases or random priming - nevertheless, ...
written 10 months ago by quokka10
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Opinion on FastQC output for HiSeq 4000 PE sequencing run
... Hello, I recently had four 400bp insert plant DNA libraries sequenced (2x150bp) using one HiSeq 4000 lane. I've attached FastQC outputs for R1 and R2 of one of these libraries. It seems like their are some issues with low-flow sections on the cell(?). R2 reads are noticeably lower quality than t ...
hiseq 4000 illumina pcr-free next-gen bias written 10 months ago by quokka10

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