User: judhenaosa
judhenaosa • 0
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Posts by judhenaosa
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... Hi.
The data correspond to metabolomics (MS/MS, 51 metabolites), and proteomics (sommalogic, 1400 proteins approx). I have 40 samples. From them, 10 have a replicated data.
I gonna use the data to apply sample clustering via dimensionality reduction approaches like iCluster or MOFA.
If you have a ...
written 4 months ago by
judhenaosa • 0
1
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... Dear all.
I have a question about how to work with the data I have.
The next table is an example of it:
--------------
Sample ID
Protein 1
Protein 2
Protein 3
Protein 4
Protein 5
sample 1
0.75
0.87
0.23
0.16
0.47
sample 2
0.46
NA
NA
0.69
0.18
sample 3
NA
0.75
NA
0.62
0.35
sample 3
0 ...
written 4 months ago by
judhenaosa • 0
• updated
4 months ago by
Istvan Albert ♦♦ 86k
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... Thanks for your help.
My next question is about the lmFit function. I mean, I want to see the specific effect of the control samples over the treatment samples and the effect of the virusA vs virusB, and extract the differentially expressed genes in each individual case. However, I do not know how ...
written 15 months ago by
judhenaosa • 0
2
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... Hi.
I have a question. I am working with a microarray with the next samples:
* control_rep_1
* control_rep_2
* virusA_rep_1
* virusA_rep_2
* virusA_rep_3
* virusB_rep_1
* virusB_rep_2
* virusB_rep_3
* virusA_virusB_rep_1
* virusA_virusB_rep_2
* virusA_virusB_rep_3
I have to extract the differenti ...
written 15 months ago by
judhenaosa • 0
• updated
15 months ago by
h.mon ♦ 32k
0
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... Hi.
I have the pathways obtained from an enrichment analysis for five conditions (Condition_A, Condition_B, Condition_C, and Condition_D). With the pathways lists, I made an intersection set (vennDiagram), and I obtained the number of common pathways for every possible combination just the next tab ...
written 17 months ago by
judhenaosa • 0
• updated
16 months ago by
egeulgen • 1.1k
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... Hi.
I forgot to say that, I have biological replicates n=3.
Regards,
Juan ...
written 17 months ago by
judhenaosa • 0
1
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... Hi.
I have a question about lima-voom design. I have an experiment just like I'm showing you in the next table:
Sample
cell-type
treatment
C.A
A
C
S.A
A
S
C.B
B
C
S.B
B
S
N.A
A
N
H. ...
written 17 months ago by
judhenaosa • 0
0
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3.1k
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... Sorry.
Here a new attempt.
![enter image description here][1]
[1]: https://i.ibb.co/XVQ1wm0/histogram.jpg ...
written 2.0 years ago by
judhenaosa • 0
0
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... Hi.
I shared the histogram and the overlap normal curve:
data.table$y <- NULL
row.names(data.table) <- data.table$Name
data.table$Name <- NULL
head(data.table)
all.data <- unlist(data.table)
hist(all.data,probability = T,ylim = c(0,0.12))
curve(dnorm(x,me ...
written 2.0 years ago by
judhenaosa • 0
0
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1
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3.1k
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... Thanks for your help.
I have an expression matrix as I show you n the next table.
Name y GAPDH PGK1 BRACA1 PPIA
Sample_1 1 -3.862188587 4.0051135284 5.3343408926 -1.5971560514
Sample_2 1 -4.3324333866 4.7910247638 6.9940989042 1.3791251185
Sample_3 1 -5 ...
written 2.0 years ago by
judhenaosa • 0
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