Moderator: JC

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JC12k
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Location:
Mexico
Website:
http://about.me/jcabal...
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Last seen:
14 hours ago
Joined:
8 years, 8 months ago
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Computational Biologist

Posts by JC

<prev • 1,201 results • page 1 of 121 • next >
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Comment: C: How to Run IGV on Linux Remote Machine
... you can use an [SSH-X11][1] forwarding or use a [VNC][2] session to run IGV on your remote machine [1]: https://kb.iu.edu/d/bdnt [2]: https://www.linuxtopia.org/HowToGuides/VNC_setup_Linux_Windows.html ...
written 18 hours ago by JC12k
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Comment: C: Merging multiple tsv files
... hard to know what exactly you have and what you want, you can use `cat` to concatenate files ...
written 1 day ago by JC12k
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Answer: A: Do I need to search for the complementary sequence when using regex?
... short answer: Yes long answer: DNA encodes information in both chains, also you assembly is most likely not oriented as de-novo assemblers just assemble without specific direction ...
written 14 days ago by JC12k
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Answer: A: How to apply CUTADAPT on multiple fastq files using linux?
... 1. get a list of files (look for what `find` command do) 2. iterate over the same command (look for `for` or `parallel`) 3. take a coffee meanwhile this is running ...
written 14 days ago by JC12k
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Answer: A: Extracting only reads mapped to specific genomic region
... you can extract reads mapped in a region with [samtools view][1] [1]: http://www.htslib.org/doc/samtools-view.html ...
written 6 weeks ago by JC12k
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Answer: A: How to create a SNP VCF file?
... VCFs are generally created from real data using GATK, FreeBayes, samtools/bcftools, etc. ...
written 7 weeks ago by JC12k
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Comment: C: opening fasta file in python3
... Please share your code, otherwise is impossible to know what are you doing wrong ...
written 7 weeks ago by JC12k
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Comment: C: Batch run in R
... Read the chapter 6 in https://cran.r-project.org/doc/contrib/Paradis-rdebuts_en.pdf ...
written 7 weeks ago by JC12k
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Answer: A: How to identify the 300 kb upstream and downstream genes of lncRNAs?
... Use biomart https://www.ensembl.org/biomart/martview ...
written 7 weeks ago by JC12k
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Comment: C: R package or other software that I can use data(snps) from 1000genomes and make
... Unless you have some private data, I am not aware of some dataset that correlates hapmap or 1000G participants with flu ...
written 7 weeks ago by JC12k

Latest awards to JC

Scholar 13 days ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 10 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 10 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 12 weeks ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Appreciated 3 months ago, created a post with more than 5 votes. For A: Programming Challenge - Synthetic Whole Genome Vcf
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 3 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Scholar 4 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Appreciated 4 months ago, created a post with more than 5 votes. For A: Programming Challenge - Synthetic Whole Genome Vcf
Good Answer 4 months ago, created an answer that was upvoted at least 5 times. For A: Programming Challenge - Synthetic Whole Genome Vcf
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 4 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar 4 months ago, created an answer that has been accepted. For A: Best way to remove contaminants to get nuclear genome

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