Moderator: JC
JC ♦ 11k
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- Last seen:
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- Joined:
- 8 years, 5 months ago
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Computational Biologist
Posts by JC
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... Is that an FTP server? can you use Rsync in the command line?
If the network is bad even Aspera will fail, sometimes I prefer to ship some physical USB drives across continents/countries. ...
written 19 hours ago by
JC ♦ 11k
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Comment:
C: denovo assembly using soap denovo
... Are you assembly the same dataset? Any kmer-based assembler will need to tweak the kmer value (or use multiple sets) to get a good assembly. ...
written 4 days ago by
JC ♦ 11k
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... Just read this https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008281
I believe that is why Bioinformatics/Computational Biology exists
Thoughts?
...
written 4 days ago by
JC ♦ 11k
• updated
4 days ago by
Istvan Albert ♦♦ 85k
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... You can get the annotation from affymetrix http://www.affymetrix.com/support/technical/byproduct.affx?product=hg-u133-plus ...
written 5 days ago by
JC ♦ 11k
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Answer:
A: correlation of genes
... Not really, if the gene is involved in some generic metabolic pathway or not defined function, the correlation is not showing any similar function. In contrast, if the gene is part of a specific response or pathway could say that the function is shared, but I would expect more than one gene to be co ...
written 5 days ago by
JC ♦ 11k
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... Is this a homework/test? Otherwise please justify your questions ...
written 6 days ago by
JC ♦ 11k
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Answer:
A: GO annotations into GFF3
... GO_REF is another annotation https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md ...
written 8 days ago by
JC ♦ 11k
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... Thanks, added the location, it's open to international applicants. ...
written 8 days ago by
JC ♦ 11k
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... **Leadership Position: Biomedical Data and Applications Centre of Excellence**
Databiology is a leading global solutions provider in the Biomedical Federated Data Analytics space, supporting both commercial and academic customers in their collection and use of biomedical data assets. www.databiol ...
written 8 days ago by
JC ♦ 11k
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... I agree with what RamRS pointed, your coverage is too low, any finding is also not definitive unless you have more data and expert evaluation by geneticists and doctors. If you want the data just to showcase what Personal Genomics is:
1. Annotate your VCFs with [VEP][1], use also [Gemini][2] to ea ...
written 12 days ago by
JC ♦ 11k
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For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
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