Moderator: JC
JC ♦ 12k
- Reputation:
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- Location:
- Mexico
- Website:
- http://about.me/jcabal...
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- Google Scholar Page
- Last seen:
- 14 hours ago
- Joined:
- 8 years, 8 months ago
- Email:
- j*******************@gmail.com
Computational Biologist
Posts by JC
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... you can use an [SSH-X11][1] forwarding or use a [VNC][2] session to run IGV on your remote machine
[1]: https://kb.iu.edu/d/bdnt
[2]: https://www.linuxtopia.org/HowToGuides/VNC_setup_Linux_Windows.html ...
written 18 hours ago by
JC ♦ 12k
0
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1
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87
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1
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Comment:
C: Merging multiple tsv files
... hard to know what exactly you have and what you want, you can use `cat` to concatenate files ...
written 1 day ago by
JC ♦ 12k
2
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1
answer
112
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1
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... short answer: Yes
long answer: DNA encodes information in both chains, also you assembly is most likely not oriented as de-novo assemblers just assemble without specific direction ...
written 14 days ago by
JC ♦ 12k
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84
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... 1. get a list of files (look for what `find` command do)
2. iterate over the same command (look for `for` or `parallel`)
3. take a coffee meanwhile this is running ...
written 14 days ago by
JC ♦ 12k
1
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1
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125
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... you can extract reads mapped in a region with [samtools view][1]
[1]: http://www.htslib.org/doc/samtools-view.html ...
written 6 weeks ago by
JC ♦ 12k
0
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2
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168
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2
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Answer:
A: How to create a SNP VCF file?
... VCFs are generally created from real data using GATK, FreeBayes, samtools/bcftools, etc. ...
written 7 weeks ago by
JC ♦ 12k
0
votes
0
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104
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0
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Comment:
C: opening fasta file in python3
... Please share your code, otherwise is impossible to know what are you doing wrong ...
written 7 weeks ago by
JC ♦ 12k
1
vote
0
answers
171
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0
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Comment:
C: Batch run in R
... Read the chapter 6 in https://cran.r-project.org/doc/contrib/Paradis-rdebuts_en.pdf ...
written 7 weeks ago by
JC ♦ 12k
0
votes
2
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150
views
2
answers
... Use biomart https://www.ensembl.org/biomart/martview ...
written 7 weeks ago by
JC ♦ 12k
1
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0
answers
199
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0
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... Unless you have some private data, I am not aware of some dataset that correlates hapmap or 1000G participants with flu ...
written 7 weeks ago by
JC ♦ 12k
Latest awards to JC
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13 days ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
7 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
7 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
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10 weeks ago,
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For A: Best way to remove contaminants to get nuclear genome
Scholar
10 weeks ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
12 weeks ago,
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For A: Best way to remove contaminants to get nuclear genome
Teacher
12 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Appreciated
3 months ago,
created a post with more than 5 votes.
For A: Programming Challenge - Synthetic Whole Genome Vcf
Teacher
3 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
3 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Scholar
3 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
3 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
3 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Scholar
3 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Scholar
3 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Scholar
4 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Appreciated
4 months ago,
created a post with more than 5 votes.
For A: Programming Challenge - Synthetic Whole Genome Vcf
Good Answer
4 months ago,
created an answer that was upvoted at least 5 times.
For A: Programming Challenge - Synthetic Whole Genome Vcf
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
4 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
4 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
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