Moderator: JC
JC ♦ 9.5k
- Reputation:
- 9,510
- Status:
- Trusted
- Location:
- Mexico
- Website:
- http://about.me/jcabal...
- Scholar ID:
- Google Scholar Page
- Last seen:
- 8 hours ago
- Joined:
- 7 years, 9 months ago
- Email:
- j*******************@gmail.com
Computational Biologist
Posts by JC
<prev
• 851 results •
page 1 of 86 •
next >
1
vote
1
answer
58
views
1
answers
... >I have a matrix where the distance between two of the taxa is unknown.
Your matrix is not good, you need to have a distance for all your pairs. ...
written 2 days ago by
JC ♦ 9.5k
0
votes
1
answer
59
views
1
answers
... You can use the [1000Genomes Data portal][1]
[1]: https://www.internationalgenome.org/data-portal ...
written 2 days ago by
JC ♦ 9.5k
0
votes
0
answers
53
views
0
answers
... Did you read [this][1]?
[1]: https://www.encodeproject.org/help/rest-api/ ...
written 2 days ago by
JC ♦ 9.5k
1
vote
2
answers
103
views
2
answers
... I'm not sure if this could work unless you properly provide examples, but here is a Perl script to do the job:
#!/usr/bin/perl
use strict;
use warnings;
my $tpm_file = "your_tpm.txt";
my $fasta_file = "your_Fasta.fa";
my $new_fasta = "output_fasta.fa";
my ...
written 2 days ago by
JC ♦ 9.5k
0
votes
2
answers
103
views
2
answers
... Yes, examples could be better to understand how complex/easy it is.
...
written 3 days ago by
JC ♦ 9.5k
1
vote
1
answer
123
views
1
answers
... yes, that will show the full alignment in sections, for example, if I modify a little a Ferroxidase:
>AAM45881.1 multicopper ferroxidase [Chlamydomonas reinhardtii]
MDSKEAAEPASVHVNVDVEAQKAQAQAEAAAKGGACATSGMSKGKIIVTSLVIFLGVAVGVGLGVGLGVG
LKKDDGSSAYTSLDLGTGSGGGNTYFVAADKIQWNYAPSGRNKCFPPD ...
written 3 days ago by
JC ♦ 9.5k
0
votes
1
answer
123
views
1
answers
... No, -num_alignments still will show partial alignments in table format ...
written 4 days ago by
JC ♦ 9.5k
5
votes
1
answer
123
views
1
answers
... Those are not duplicates, those are partial alignments. ...
written 4 days ago by
JC ♦ 9.5k
1
vote
1
answer
84
views
1
answers
... The reference data from NCBI contains haplotype chromosomes and alternative regions. You can use the sequences from [GATK bundle][1]
[1]: https://gatk.broadinstitute.org/hc/en-us/articles/360036212652 ...
written 9 days ago by
JC ♦ 9.5k
1
vote
1
answer
60
views
1
answers
... That is a haplotype sequence, check https://www.ensembl.org/Help/Faq?id=291 for more information ...
written 9 days ago by
JC ♦ 9.5k
Latest awards to JC
Scholar
2 days ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Appreciated
2 days ago,
created a post with more than 5 votes.
For A: Programming Challenge - Synthetic Whole Genome Vcf
Teacher
4 days ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
18 days ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
8 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
8 weeks ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Scholar
9 weeks ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
9 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
10 weeks ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For Bioinformatician, Cellnetix Pathology And Laboratories, Seattle, Wa
Scholar
3 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
3 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
4 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
4 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
4 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
4 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Scholar
5 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
5 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
5 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Scholar
6 months ago,
created an answer that has been accepted.
For A: Best way to remove contaminants to get nuclear genome
Teacher
6 months ago,
created an answer with at least 3 up-votes.
For A: What Do The Period . Symbols Mean In The Sequence Record Of A Fastq File
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1544 users visited in the last hour