User: Mostafa

gravatar for Mostafa
Mostafa10
Reputation:
10
Status:
New User
Location:
Twitter:
mossishahi
Last seen:
1 week, 2 days ago
Joined:
1 month, 2 weeks ago
Email:
s**************@gmail.com

Posts by Mostafa

<prev • 5 results • page 1 of 1 • next >
5
votes
2
answers
118
views
2
answers
Scaffolding contigs generated by minia
... I have a large number of read libraries, doing denovo assembly by minia. The minia generates some files. Does any body know that how is it possible to use the generated file in order to make scaffolds by a scaffolder? any same experience? ...
genome assembly denovo_assembly minia scaffolding written 9 days ago by Mostafa10 • updated 8 days ago by RamRS17k
0
votes
1
answer
191
views
1
answers
Comment: C: which gap filler do you recommend?
... it's a good approach which we are following in parallel by using abyss assembler for assembling the whole data, 10X added to them. but using gap fillers can be useful in any case. am I right? ...
written 5 weeks ago by Mostafa10
0
votes
1
answer
191
views
1
answers
Comment: C: which gap filler do you recommend?
... We have a draft genome which its size is about 1.52Gb. its generated from some libraries of paired-end and mate pair reads. Actually, its assembled from 3 paired-end and 3 mate pair library with a coverage between 16x and 70x. in addition to the data which are assembled to our draft genome, we have ...
written 5 weeks ago by Mostafa10
0
votes
1
answer
191
views
1
answer
which gap filler do you recommend?
... Does anyone have useful experience or know some paper in comparing different gap fillers like Sealer, FGAP, GapCloser (part of SOAPdenovo), and etc? thanks ...
genome assembly gapfiller written 5 weeks ago by Mostafa10 • updated 5 weeks ago by k.kathirvel93100
0
votes
0
answers
114
views
0
answers
Enhancing draft genome using 10X data
... We are trying to enhance a present draft genome of an species of Planaria. The size of the present draft genome is about 1.52Gbp. We used [Arcs][1] to enhance our draft genome, the result is almost good but only the scaffolds are augmented and the total size of the draft genome is not changed. It wa ...
10x assembly draft_genome written 6 weeks ago by Mostafa10

Latest awards to Mostafa

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1372 users visited in the last hour