User: Mostafa

gravatar for Mostafa
Mostafa10
Reputation:
10
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New User
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Twitter:
mossishahi
Last seen:
4 weeks, 1 day ago
Joined:
5 months, 2 weeks ago
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s**************@gmail.com

Posts by Mostafa

<prev • 10 results • page 1 of 1 • next >
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Comment: C: k mer analysis
... our coverage is almost good, but the genome is highly repetitive and we are aware that more coverage could be helpful. However, the result is much weaker than you would think about the coverage. ...
written 5 weeks ago by Mostafa10
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Comment: C: k mer analysis
... Thanks. Actually, we have not observed expected results on from Supernova and are exploring for the reasons in analytical step. ...
written 5 weeks ago by Mostafa10
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k mer analysis
... Hi everyone! I am wondering to do a k mer analysis on my input 10X reads lib which has been pre processed by longranger basic. It aims to find the best k value for my assembly. I thought that KAT can help me. but it seems that it does not apply the different k values does anyone know the proper ...
k-mer assembly analysis kmer written 5 weeks ago by Mostafa10
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10X data related to an AT rich genome
... Hi We are looking for a 10X data library related to an AT-rich genome in order to test our denovo genome assembler. Does anyone know any published library? or even have any information about AT-rich genomes? Thanks ...
10x assembly at_rich genome written 10 weeks ago by Mostafa10
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Comment: C: Enhancing draft genome using 10X data
... I'm sorry for the delay in my response. If it works for you please contact me on Shahhosseini.94@gmail.com in order to discuss your questions. ...
written 10 weeks ago by Mostafa10
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Scaffolding contigs generated by minia
... I have a large number of read libraries, doing denovo assembly by minia. The minia generates some files. Does any body know that how is it possible to use the generated file in order to make scaffolds by a scaffolder? any same experience? ...
genome assembly denovo_assembly minia scaffolding written 4 months ago by Mostafa10 • updated 4 months ago by RamRS20k
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Comment: C: which gap filler do you recommend?
... it's a good approach which we are following in parallel by using abyss assembler for assembling the whole data, 10X added to them. but using gap fillers can be useful in any case. am I right? ...
written 5 months ago by Mostafa10
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Comment: C: which gap filler do you recommend?
... We have a draft genome which its size is about 1.52Gb. its generated from some libraries of paired-end and mate pair reads. Actually, its assembled from 3 paired-end and 3 mate pair library with a coverage between 16x and 70x. in addition to the data which are assembled to our draft genome, we have ...
written 5 months ago by Mostafa10
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which gap filler do you recommend?
... Does anyone have useful experience or know some paper in comparing different gap fillers like Sealer, FGAP, GapCloser (part of SOAPdenovo), and etc? thanks ...
genome assembly gapfiller written 5 months ago by Mostafa10 • updated 5 months ago by k.kathirvel93170
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Enhancing draft genome using 10X data
... We are trying to enhance a present draft genome of an species of Planaria. The size of the present draft genome is about 1.52Gbp. We used [Arcs][1] to enhance our draft genome, the result is almost good but only the scaffolds are augmented and the total size of the draft genome is not changed. It wa ...
10x assembly draft_genome written 5 months ago by Mostafa10

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