User: nnutter

gravatar for nnutter
nnutter200
Reputation:
200
Status:
Trusted
Location:
St. Louis, MO
Website:
http://gmt.genome.wust...
Twitter:
nnutter
Last seen:
2 years, 6 months ago
Joined:
5 years, 6 months ago
Email:
n******@genome.wustl.edu

Analysis Developer at the Genome Institute at Washington University.

Posts by nnutter

<prev • 35 results • page 1 of 4 • next >
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Answer: A: how can i find the source code of the genome music
... See Tutorial: Installation of the MuSiC suite on unsupported Linux distributions. ...
written 2.6 years ago by nnutter200
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Comment: C: TCGA Wiggle files for MuSiC
... I don't think you've left enough information in your question for anyone to be able to offer advice.  I suspect the answer will be along the lines of how to automate downloading those 400 files.  It's definitely a skill worth investing time in. ...
written 2.6 years ago by nnutter200
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Comment: C: Issues with local installation of SomaticSniper
... Your OS may provide a recent enough version of cmake as well.  If you are on OS X Homebrew (or similar) is a pretty invaluable tool for installing tools such as cmake. ...
written 2.8 years ago by nnutter200
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Answer: A: Issues with local installation of SomaticSniper
... You probably need to install CMake; it's listed as one of the build dependencies. ...
written 2.8 years ago by nnutter200
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Comment: C: Varscan output contains dots
... This question was cross-posted on SEQanswers. ...
written 2.9 years ago by nnutter200
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Comment: C: MuSic Pfam file path in Linux RHEL
... You'll need to generate an index for the VCF file with tabix.  However, I don't know the exact command to accomplish that. Edit: It looks like there are tabix-related questions asked here, for example, Question: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi. ...
written 3.0 years ago by nnutter200
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Answer: A: MuSic Pfam file path in Linux RHEL
... I think you need to set the GENOME_DB environment variable.  For example, $ export GENOME_DB='/shared/unmc1/unmc_gudalab/nitish123/Tools/music/genome-databases-1/db' $ perl -MGenome -e 'print Genome::Sys->dbpath(qw(pfam latest)), qq(\n)' /shared/unmc1/unmc_gudalab/nitish123/Tools/music/genome-d ...
written 3.0 years ago by nnutter200
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Comment: C: Problem for pindel2vcf to create VCF file from pindel created _D files
... This was cross-posted on SEQanswers. ...
written 3.0 years ago by nnutter200
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Comment: C: Floating point exception [somatic sniper v1.0.4]
... An issue was filed by OP on the somatic-sniper GitHub issues page. ...
written 3.0 years ago by nnutter200
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Answer: A: Breakdancer installing problem
... Did you follow the install instructions? ...
written 3.1 years ago by nnutter200

Latest awards to nnutter

Scholar 2.8 years ago, created an answer that has been accepted. For A: Issues with local installation of SomaticSniper
Supporter 3.7 years ago, voted at least 25 times.

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