User: ma17

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ma170
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Posts by ma17

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Calculating Fst for Multiallelic variants in VCFs
... Hi, I have a vcf file composed of multiallelic variants and I'm trying to calculate Fst between populations. Vcftools --weir-fst-pop only calculates fst for biallelic variants. Is there a tool that can directly calculate fst for multiallelic variants using vcf files? Thanks ...
vcf multiallelic fst written 12 months ago by ma170
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Comment: C: Merge vcf files of structural variants
... Thanks! Exactly what I was looking for ...
written 13 months ago by ma170
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Merge vcf files of structural variants
... Hi, I have many single sample vcf files containing structural variants. I'm trying to merge all the vcfs to one multi-sample vcf, however as the breakpoints of structural variants are only estimates, the position of the same structural variant in different samples would be slightly different. Is th ...
vcf merge structural_variants written 13 months ago by ma170 • updated 13 months ago by WouterDeCoster40k

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