User: J. Zhang

gravatar for J. Zhang
J. Zhang10
Reputation:
10
Status:
New User
Location:
China/Wuhan/HUST
Last seen:
20 hours ago
Joined:
6 months ago
Email:
z********@gmail.com

Posts by J. Zhang

<prev • 9 results • page 1 of 1 • next >
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Comment: C: How does GATK PhaseByTransmission define the phasing of Father and Mother?
... Hi, GATK4 doesn' include PhaseByTransmission. So my question is how to do that. Thanks. ...
written 14 days ago by J. Zhang10
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Comment: C: SNP Calling Parameter Settings
... A little more than 2 million is appropriate, as far as I know. ...
written 24 days ago by J. Zhang10
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SNP Calling Parameter Settings
... Hi everyone, I am using family trios data to run GATK's SNP calling pipeline. The HaplotypeCaller gave me the father's SNPs file, which I have recalibrated using VariantRecalibrator. But the final VCF file still has 3 million “PASS” records. Actually, one human has no chance to carry so many SNPs. ...
vcf gatk snp written 26 days ago by J. Zhang10 • updated 25 days ago by zx87546.5k
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Comment: C: Bioinformatics terms that might be confusing for beginners
... just to elucidate my question, LOL ...
written 4 months ago by J. Zhang10
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Comment: C: Bioinformatics terms that might be confusing for beginners
... What really confused me is not the true meaning or professional definition of the base quality. I know it is well defined. And I'm just interested in the story why we use this word *Phred* , which I can not figure out according to the definition because it is not abbreviation of other terms. In oth ...
written 4 months ago by J. Zhang10
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Forum: Bioinformatics terms that might be confusing for beginners
... Everyone involved in bioinformatics should first understand the concept of the base quality, which is Phred score. But for beginners, why the base quality was named that might still be confusing. Does anyone have other examples like this? Thanks. For instance, *Bowtie*, *TopHat*,*Cufflinks* ,*Stri ...
bioinformatics forum blog written 4 months ago by J. Zhang10 • updated 4 months ago by Bastien Hervé3.3k
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Comment: C: Which database software is better for bioinformatics web development? MySQL or M
... Great idea! There are so many things I never learned. Thanks, it really help me a lot. ...
written 5 months ago by J. Zhang10
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Comment: C: Which database software is better for bioinformatics web development? MySQL or M
... Thank you very much! I will give it a try. ...
written 5 months ago by J. Zhang10
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Forum: Which database software is better for bioinformatics web development? MySQL or MongoDB?
... Once I did a bioinformatics project using MongoDB, but I'm kind of confused which database software is more suitable for ***bioinformatics web development***. Sure, MySQL, relational database, is great. However, what's the difference between the performance of these two kinds of database, relational ...
mongodb database software mysql bioinformatics forum written 5 months ago by J. Zhang10 • updated 5 months ago by Eric Lim1.2k

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