User: mcclintock

gravatar for mcclintock
mcclintock10
Reputation:
10
Status:
New User
Location:
China/Wuhan/HUST
Last seen:
2 months, 2 weeks ago
Joined:
10 months, 3 weeks ago
Email:
z********@gmail.com

Posts by mcclintock

<prev • 10 results • page 1 of 1 • next >
0
votes
3
answers
1.2k
views
3
answers
Answer: A: Trouble with BioMart Perl API installation
... > Processing Cached Registry: > /share/home/software/biomart-perl/conf/cachedRegistries/martURLLocation.xml.cached > > Problems with the web server: 302 Found > > Gene stable ID Transcript stable ID HGNC symbol > UniProtKB/Swiss-Prot ID why I got this with nearly the ...
written 4 months ago by mcclintock10
0
votes
2
answers
1.9k
views
2
answers
Comment: C: How does GATK PhaseByTransmission define the phasing of Father and Mother?
... Hi, GATK4 doesn' include PhaseByTransmission. So my question is how to do that. Thanks. ...
written 5 months ago by mcclintock10
0
votes
0
answers
270
views
0
answers
Comment: C: SNP Calling Parameter Settings
... A little more than 2 million is appropriate, as far as I know. ...
written 5 months ago by mcclintock10
1
vote
0
answers
270
views
0
answers
SNP Calling Parameter Settings
... Hi everyone, I am using family trios data to run GATK's SNP calling pipeline. The HaplotypeCaller gave me the father's SNPs file, which I have recalibrated using VariantRecalibrator. But the final VCF file still has 3 million “PASS” records. Actually, one human has no chance to carry so many SNPs. ...
vcf gatk snp written 5 months ago by mcclintock10 • updated 4 months ago by Biostar ♦♦ 20
0
votes
4
answers
631
views
4
answers
Comment: C: Bioinformatics terms that might be confusing for beginners
... just to elucidate my question, LOL ...
written 9 months ago by mcclintock10
0
votes
4
answers
631
views
4
answers
Comment: C: Bioinformatics terms that might be confusing for beginners
... What really confused me is not the true meaning or professional definition of the base quality. I know it is well defined. And I'm just interested in the story why we use this word *Phred* , which I can not figure out according to the definition because it is not abbreviation of other terms. In oth ...
written 9 months ago by mcclintock10
17
votes
4
answers
631
views
14 follow
4
answers
Forum: Bioinformatics terms that might be confusing for beginners
... Everyone involved in bioinformatics should first understand the concept of the base quality, which is Phred score. But for beginners, why the base quality was named that might still be confusing. Does anyone have other examples like this? Thanks. For instance, *Bowtie*, *TopHat*,*Cufflinks* ,*Stri ...
bioinformatics forum blog written 9 months ago by mcclintock10 • updated 9 months ago by Bastien Hervé4.4k
0
votes
3
answers
857
views
3
answers
Comment: C: Which database software is better for bioinformatics web development? MySQL or M
... Great idea! There are so many things I never learned. Thanks, it really help me a lot. ...
written 9 months ago by mcclintock10
0
votes
3
answers
857
views
3
answers
Comment: C: Which database software is better for bioinformatics web development? MySQL or M
... Thank you very much! I will give it a try. ...
written 9 months ago by mcclintock10
15
votes
3
answers
857
views
5 follow
3
answers
Forum: Which database software is better for bioinformatics web development? MySQL or MongoDB?
... Once I did a bioinformatics project using MongoDB, but I'm kind of confused which database software is more suitable for ***bioinformatics web development***. Sure, MySQL, relational database, is great. However, what's the difference between the performance of these two kinds of database, relational ...
mongodb database software mysql bioinformatics forum written 9 months ago by mcclintock10 • updated 9 months ago by Eric Lim1.4k

Latest awards to mcclintock

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1483 users visited in the last hour