User: bagdevi.mishra

Reputation:
50
Status:
New User
Location:
Germany
Last seen:
2 months, 3 weeks ago
Joined:
8 years ago
Email:
b*************@gmail.com

about me

Posts by bagdevi.mishra

<prev • 6 results • page 1 of 1 • next >
0
votes
2
answers
2.0k
views
2
answers
Answer: A: Question about input sequences for codeml in PAML
... I have tried working with using all sequences and also working with only the unique haplotypes. In both the cases, the result is same. Using less number of sequence is, for sure, computationally less expensive. So, working with 15 haplotypes is advisable. ...
written 5.6 years ago by bagdevi.mishra50
0
votes
2
answers
8.6k
views
2
answers
Answer: A: Paml - Branch-Site Models
... To get a tree with separate omega value for each branch in the tree as the output, one can use branch-based free-ratio model in codeml with the following paraemters. model = 1 NS sites = 0     ...
written 5.6 years ago by bagdevi.mishra50
0
votes
3
answers
8.1k
views
3
answers
Comment: C: Detect Positively Selected Sites Among A Lineage In Paml
... It is a 20 months old thread, but I am adding some answers to the queries posted by yangzhenzhen1988 above, which may benefit others. Please read the query completely in the above post to get a clear idea of what I am answering. 1// I wonder what the degree of freedom is, how we can estimate that. ...
written 5.6 years ago by bagdevi.mishra50
1
vote
73
answers
33k
views
73
answers
Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
... oops.. I did that several times. ...
written 5.7 years ago by bagdevi.mishra50 • updated 6 days ago by RamRS27k
3
votes
0
answers
3.4k
views
0
answers
Tool: GUI for MrBayes
... We have developed siMBa (simple MrBayes), a simple graphical user interface for MrBayes. This tool gives the user interactive control over most of the parameters and also facilitates the input of a multiple sequence alignment, as any widely used format can be used. siMBa is coded in Perl using the T ...
mrbayes phylogenetic anlyses bayesian inference tool written 5.7 years ago by bagdevi.mishra50 • updated 5.7 years ago by Istvan Albert ♦♦ 84k
1
vote
3
answers
16k
views
3
answers
Answer: A: How Can I Calculate Ic50 Values?
... In my view, IC 50 value should be obtained experimentally in stead of deriving it from QSAR study. Even though similar molecules can be expected to have similar IC50 values, I have done extensive study on this issue and have inferred that, different experimental procedure result in different IC 50 v ...
written 8.1 years ago by bagdevi.mishra50

Latest awards to bagdevi.mishra

Popular Question 5.4 years ago, created a question with more than 1,000 views. For GUI for MrBayes

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2028 users visited in the last hour