User: gireeshkbogu

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Posts by gireeshkbogu

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How O Assign A Color Ro Bed Regions (Ucsc)
... Hi, I am trying to assign a red color to my H3K4me1 peaks to upload into UCSC. I tried the following but it gave black default color. Does any know how to handle this ? chr1 4774861 4776861 promoter 0 . 4774861 4776861 255,0,0 ...
ucsc written 7.4 years ago by gireeshkbogu0 • updated 7.4 years ago by Ryan Dale4.8k
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Fpkm Values Of Cumerge Transcripts Are Low
... Hi, I merged two transcripts using cuffmerge that are de novo assembled by cufflinks. The resulting cuffmerge-transcript.gtf has very low FPKM values compared to cufflinks-transcripts.gtf files. More importantly the cuffmerge-transcripts.gtf file FPKM values are in between 0 and 1 range, where as c ...
cufflinks cuffmerge rna-seq written 7.6 years ago by gireeshkbogu0

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