User: deepthitheresa

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New User
Location:
Canada
Last seen:
3 years, 11 months ago
Joined:
6 years, 4 months ago
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Posts by deepthitheresa

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Parsing Fastq Files
... Good suggestion. It helped me a lot ...
written 6.1 years ago by deepthitheresa20
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Forum: (Closed) Perl:Sorting And Merging Files
... Hi all, I have around 10,000 files having KB sizes. All files contains same type and number of tab separated records. I want to merge all the files and sort the records based on a particular column. Which will be the fastest way. Thanks, Deeps ...
perl merge forum sort written 6.1 years ago by deepthitheresa20
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Answer: A: Piping With Samtools, Bwa And Bedtools
... Hi Ying, I already posted the issue in the Biostar. I am sending you the link. http://www.biostars.org/post/show/12747/how-to-combine-two-samtools-commands/#45006 Thanks, Deepthi ...
written 6.3 years ago by deepthitheresa20
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Answer: A: Piping With Samtools, Bwa And Bedtools
... Hi I tried piping samtools. It is not working properly. Only first command is doing correctly. Anyway thank you for sharing the concept of piping. Deeps ...
written 6.4 years ago by deepthitheresa20
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Answer: A: How To Combine Two Samtools Commands.
... Hi all, I am also having the same problem. I want to pipe the samtools view(sam to bam converter) ,samtools sort and samtools index . samtools view -S file1.sam -b > file1.bam | samtools sort - - | samtools index file1.bam But I am getting error like following: [bamheaderread] invalid BAM ...
written 6.4 years ago by deepthitheresa20
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Parsing Fastq Files
... Hi all, I have Fastq reads something like @HWI-ST1162:73:C0KEFACXX:6:1101:1816:1918 1:N:0:CGATGT NACCCTAGAAATTATAAATCTCTTCAAGTGAGATTGTAAGGAGAAGGAGAAACTTGGTCTGGAATTTGTTATAAAAGCACTT + #1=DDFFFHHGGHIJJJJJIJJJJJJJJCHGHIIJJEFHIJIJJIIJIIIIJHHIJJFHIIJJJJJJJIJIJIJIIJHEHHHHFFFFFFEEEDEEEDCDDC I aligned t ...
fastq parsing written 6.4 years ago by deepthitheresa20 • updated 6.4 years ago by jingtao09110

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