User: jimhavrilla

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Posts by jimhavrilla

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Comment: C: Best Way To Do Pathway Analysis Of A Set Of Genes?
... Yes, CPDB was incredibly useful. This database needs to be more well-known. Also Reactome and DAVID worked well for me. ...
written 26 days ago by jimhavrilla0
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Comment: C: Amino Acid Change To Genomic Location
... To anyone who is still trying to use this, best thing I could do to get this to compile was to follow the instructions here: https://github.com/lindenb/jvarkit/wiki/BackLocate (use standalone=yes instruction) Worked on my macOS Sierra, and on CentOS. ...
written 11 months ago by jimhavrilla0
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Comment: C: Variant Effect Predictor warnings Chromosome 'p' not found in cache
... Thank you Will, I had the same error, and restoring the cache (which was flawed somehow) definitely fixed it. ...
written 18 months ago by jimhavrilla0
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Comment: C: Multiple Sample Time Course Study Microarray Analysis
... This is for finding genes that change expression throughout senescence. Thus time course studies only or timeseries. ...
written 5.5 years ago by jimhavrilla0
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Multiple Sample Time Course Study Microarray Analysis
... Is there a relatively simple and quick way to get a list of significant genes using a statistical technique like SAM? I have tried MATLAB, Limma, MaSigPro, without much luck. Any takers? Also I don't know much R. ...
geo multiple microarray written 5.5 years ago by jimhavrilla0 • updated 3.2 years ago by Biostar ♦♦ 20

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Popular Question 17 months ago, created a question with more than 1,000 views. For Multiple Sample Time Course Study Microarray Analysis

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