User: luzglongoria

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luzglongoria20
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16 hours ago
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11 months, 1 week ago
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Posts by luzglongoria

<prev • 64 results • page 1 of 7 • next >
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Problem with font size in a tree
... Hi, I am trying to make an interaction between two phylogenetic trees. I am able to run all the code (no errors) the problem is that the size of the letter of one of the trees is too big ![enter image description here][1] I have been able to change the size by plotting the plot and asking R to min ...
interaction fontsize cophyloplot tree written 4 days ago by luzglongoria20
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Comment: C: How to get general information of an assembly
... Thank you for the quick response :) Do they support .fa files? ...
written 4 months ago by luzglongoria20
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How to get general information of an assembly
... Hi there, I have done my assembly with Trinity and I would like to know whether is there any software for getting general info about the assembly. I would like to know: Number of bases (total number) Contig length min-max (bp) Median contig length (bp) Mean contig lenghth (bp) do you know any sof ...
software assembly rna-seq written 4 months ago by luzglongoria20 • updated 4 months ago by Buffo1.6k
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Comment: C: How to determine width of heatmap
... I am using the same version as you. Maybe the problem is that I am using two different files and pheatmap does not recognize them? ...
written 4 months ago by luzglongoria20
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Comment: C: How to determine width of heatmap
... Thank you for the comment. I used those commands and I got the same problem. Finally , I used the command `cellwidth cellheight` and it worked very well. ...
written 4 months ago by luzglongoria20
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Comment: C: How to determine width of heatmap
... Thank you much! It worked with the commands ` cellwidth cellheight ` But still the legend is over the text: https://ibb.co/wr3jjrL Any idea how to move to the left (for instance)? ...
written 4 months ago by luzglongoria20
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How to determine width of heatmap
... Hi there, I have almost done with my heatmap but I cannot figure out how to modify the command in order to see the label. Please, see below: ## Import dataset data <- read.table("Genes_with_function.txt", header = TRUE, sep = "\t", dec = ".") mat_data <- data.matrix(data[,2:ncol( ...
label_row pheatmap heatmap written 4 months ago by luzglongoria20 • updated 4 months ago by lakhujanivijay4.3k
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Comment: C: Error when running pheatmap
... str(data) 'data.frame': 45 obs. of 11 variables: $ ID : Factor w/ 44 levels "TRINITY_DN119101_c0_g1_i1",..: 23 37 20 29 5 12 11 40 31 13 ... $ s21: num 7.795 2670.699 0.96 0.468 0.428 ... $ s22: num 2.65 11313.6 2.56 1.1 1.17 ... $ s23: num 2.12 16209.19 2.81 1.75 1.7 ...
written 4 months ago by luzglongoria20
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Comment: C: Error when running pheatmap
... Thank you Kevin. I have tried to do what you have said: tbl_ready <- as.matrix(data[,2:11]) mode(tbl_ready)<-"numeric" I have checked: sum(is.infinite(tbl_ready)) [1] 0 And then I try to do the heatmap by: pheatmap(tbl_ready) And now R doesn't do anything. No error ...
written 4 months ago by luzglongoria20
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Comment: A: Error when running pheatmap
... I have also imported the data by using a .txt file by: data <- read.table("Genes_with_function.txt", header = TRUE, sep = "\t", dec = ".") and then if I do: head(data) ID s21 s22 s23 s24 s25 s31 s32 ...
written 4 months ago by luzglongoria20

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Popular Question 5 weeks ago, created a question with more than 1,000 views. For How to combine two .sam files?
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Encountered internal Bowtie 2 exception (#1) bowtie2-align exited with value 1
Popular Question 3 months ago, created a question with more than 1,000 views. For How to combine two .sam files?
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Popular Question 6 months ago, created a question with more than 1,000 views. For How to combine two .sam files?

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