User: luzglongoria

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luzglongoria20
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6 months, 1 week ago
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Posts by luzglongoria

<prev • 52 results • page 1 of 6 • next >
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Comment: C: statistical analyses for tanscriptomes
... Sorry, I didn't say. It is RNA-seq ...
written 8 hours ago by luzglongoria20
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statistical analyses for transcriptomes
... hi there, I need to do some statistical analyses of my transcriptomes. I have a database with 4 columns (gene ID (categoric), expression level (numeric), individual, species). I have 2 different species and 5 ind per species. Per each individual I have more than 20000 genes (some of them are more ...
statistical analyses R rna-seq written 8 hours ago by luzglongoria20 • updated 6 hours ago by ATpoint14k
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Answer: A: Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array exte
... Solved! It was a problem with the title of the first column :) ...
written 4 days ago by luzglongoria20
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Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent
... Hi, I am trying to create a heatmap. Before I need to transform my dataset: data <- heatmap_data rnames <- data[,1] # assign labels in column 1 to "rnames" mat_data <- data.matrix(data[,2:ncol(data)]) # transform columns (I have) into a matrix ...
R error heatmap written 4 days ago by luzglongoria20
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heatmap with ggplot: problem when indicating min and max value
... Hi, I am trying to create a heatmap by using ggplot but when I try to indicate the min and max values of my data, R automatically modifes the values. I show you what I have done: My data: ![original data][1] Showing 1 to 14 of 22 entries library(ggplot2) library(reshape2) ## transf ...
ggplot scale_fill_gradient heatmap written 4 days ago by luzglongoria20 • updated 4 days ago by Friederike3.2k
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Comment: A: How to run Trinotate
... Thank you so much h.mon for your answer. However, I get an error message when I try to run the command for Trinotate. I have create a conf.txt file that looks like: # progs TRANSDECODER_DIR=/home/luz_garcia_longoria/miniconda3/pkgs/transdecoder-5.5.0-0 BLASTX_PROG=/home/luz_garcia_lo ...
written 19 days ago by luzglongoria20
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Comment: C: How to run Trinotate
... Thank you so much for your answer. I will try like this :) ...
written 19 days ago by luzglongoria20
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How to run Trinotate
... Hi, I need to use Trinotate for finishing my transcriptomic analyses. I have followed the instructions in : https://github.com/Trinotate/Trinotate.github.io/wiki I am in the step called ' Automated Execution of Trinotate: Running computes and loading results' . Apart from running Trinotate itself ...
assembly trinotate rna-seq transcriptome written 19 days ago by luzglongoria20
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Comment: C: Basic question about SWISSPROT
... Thanks. What I want is to search against SWISSPROT using the Trinity.fasta file. The problem is that I am working with a spp. from Plasmodium which genome is not anywhere. So, I am not sure whether I need to download a subset of proteins from SWISSPROT (by selecting all the ones from Plasmodium i ...
written 4 weeks ago by luzglongoria20
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Comment: C: Basic question about SWISSPROT
... Ok, I see. But then, how can I create my own database of interesting sequenced? Thanks ...
written 4 weeks ago by luzglongoria20

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