User: SpacemanSpiffo

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Posts by SpacemanSpiffo

<prev • 8 results • page 1 of 1 • next >
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Where can I download full transcriptome profiles for specific regions in the human brain?
... I am attempting to make comparisons between the transcriptome of an IPS-derived neural stem cell and that of region-specific samples from external sources. So far I haven't been able to find any such data set available for download. Would anyone have a source to recommend? TPM format would be pref ...
rna-seq brain written 24 days ago by SpacemanSpiffo10 • updated 22 days ago by Kevin Blighe32k
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
... Wow, that worked perfectly first try, thanks very much. Any idea why `read.table()` wasn't working? Normally specifying `sep = ","` works fine ...
written 27 days ago by SpacemanSpiffo10
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
... It should have 31 I believe - just double checked and in my Excel, 31 columns are displayed when I open "first200.csv" ...
written 27 days ago by SpacemanSpiffo10
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
... Yes, thanks for replying. I've amended my original post with a link to the download for the first 200 lines. ...
written 27 days ago by SpacemanSpiffo10
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R read.table() saying line does not have correct number of elements - when I check, it definitely does
... I'm trying to read a csv table into R, but I get the following error "line 195 did not have 31 elements" however, when I check , both in Python and through copying the line into R as a string, the line (and the surrounding lines) definitely all have 31 elements. Is anyone able to hazard a guess as ...
software error R written 27 days ago by SpacemanSpiffo10 • updated 26 days ago by ATpoint9.2k
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Comment: C: SNP rs ID batch query
... No - some percentage of them are given on the reverse (-), not entirely sure why this is. For example, rs499479 ...
written 5 weeks ago by SpacemanSpiffo10
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Comment: C: 1000 Genomes Project Reports Invalid Alleles for SNPs?
... Hi Emily, thank you for responding - having looked further into what you said, it does appear that a mismatch of strandedness is my problem. The files I have, which were exported directly from GenomeStudio, report "Forward Strand" alleles for each sample - however, having now looked, it seems that ...
written 8 weeks ago by SpacemanSpiffo10
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1000 Genomes Project Reports Invalid Alleles for SNPs?
... I am attempting to utilise a SNP genotyping data set to infer ancestry using ADMIXTURE, and I want to use the 1000 Genomes Project Phase 3 data as background allele frequencies for populations. However, there is a mismatch between the alleles called for the data I am using and that used by 1KG. One ...
1kg dbsnp snp genotyping written 8 weeks ago by SpacemanSpiffo10 • updated 8 weeks ago by RamRS19k

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