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Posts by SpacemanSpiffo
... Hi Emily, thank you for responding - having looked further into what you said, it does appear that a mismatch of strandedness is my problem. The files I have, which were exported directly from GenomeStudio, report "Forward Strand" alleles for each sample - however, having now looked, it seems that ...
... I am attempting to utilise a SNP genotyping data set to infer ancestry using ADMIXTURE, and I want to use the 1000 Genomes Project Phase 3 data as background allele frequencies for populations. However, there is a mismatch between the alleles called for the data I am using and that used by 1KG. One ...
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