User: lhernanj

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lhernanj0
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Posts by lhernanj

<prev • 14 results • page 1 of 2 • next >
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Comment: C: Orthomcl from anaconda, error
... Thanks a lot for your help ATpoint. I am using many conda environments and I did not check my environment was activated because I hide the conda environment name from the prompt. Thanks again for your clear information and your help. greetings laura ...
written 3 months ago by lhernanj0
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Comment: A: Orthomcl from anaconda, error
... orthomcl is installed in my conda environment and I checked it with "conda list", however when I type "which orthomcl", no a location is found. Then orthomcl does not work because something happens when I installed orthomcl from anaconda. Maybe someone has installed orthomcl from anaconda and know ...
written 3 months ago by lhernanj0
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Orthomcl from anaconda, error
... Hi all, I have installed orthomcl from anaconda with "conda install -c bioconda orthomcl" and I have copied the config file to my working directory but orthomcl does not work. I do not know what is the problem, maybe something related to msqyl?. Any idea to fix it. thanks laura ...
orthomcl ortologues written 3 months ago by lhernanj0
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Comment: C: How can I align two proteomes?
... My data are all proteins of a strain and all proteins of another strain. I was looking at Proteinortho and I am going to try it because it seems that I need. However, what software could I use to draw the synteny after using Proteinortho? ...
written 4 months ago by lhernanj0
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Comment: C: How can I align two proteomes?
... I am not sure if that is important but the point is that I did not find any study which uses proteny with prokaryotes and furthermore it was design to detect clusters of "exons" ...
written 4 months ago by lhernanj0
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Comment: C: How can I align two proteomes?
... align all proteins of a strain against all proteins of another strain to get the synteny, that is the objective ...
written 4 months ago by lhernanj0
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How can I align two proteomes?
... Hello all, I want to align two complete proteomes, not proteins. I was thinking to try "proteny" but my proteomes are from bacteria and proteny was used to eukaryotes so I do not know if it is correct to use proteny. Does anybody know how to do that? thanks in advance ...
proteome alignment protein written 4 months ago by lhernanj0 • updated 4 months ago by h.mon28k
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Answer: A: Why can't import Biopython module when I run my scripts located in /usr/lib/cgi-
... SOLUTION: Removing anaconda from home directory and install it in usr/local. Thus, Apache will have permission to access the environment. a) Remove anaconda with $ rm -rf anaconda3/ b) Re-install anaconda3 in directory /usr/local c) Add the line export PATH='/usr/local/anaconda3/bin:$PATH' to t ...
written 6 months ago by lhernanj0
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Comment: C: Why can't import Biopython module when I run my scripts located in /usr/lib/cgi-
... Ok, I agree. I sent the same question to StackOverflow but nobody answered me with a real solution. ...
written 6 months ago by lhernanj0
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Comment: C: Why can't import Biopython module when I run my scripts located in /usr/lib/cgi-
... I guess that my problem is: I don't know how to share anaconda packages with the user of HTTP server because the HTTP server executes my scripts as user “nobody”. ...
written 6 months ago by lhernanj0

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Scholar 6 months ago, created an answer that has been accepted. For A: Why can't import Biopython module when I run my scripts located in /usr/lib/cgi-

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