User: sara_wasl

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sara_wasl0
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Posts by sara_wasl

<prev • 31 results • page 1 of 4 • next >
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Comment: C: A database to find out which genes are expressed in which cell type of origin fo
... Thanks a lot, that's kind of explained to me how things going on. ...
written 9 days ago by sara_wasl0
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Comment: C: A database to find out which genes are expressed in which cell type of origin fo
... I have a look to there data here (https://prod.data.humancellatlas.org/explore/projects) because the one you shared as they stated will be discontinuing; and as you can see there is no specific data or I cannot search by gene and most of it raw data (fastq files). ...
written 10 days ago by sara_wasl0
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Comment: C: A database to find out which genes are expressed in which cell type of origin fo
... Thanks for that but I'm interested more on human cell ...
written 10 days ago by sara_wasl0
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Comment: C: A database to find out which genes are expressed in which cell type of origin?
... I checked the first one, it doesn't specify the cell type of origin (which cell types they originate/first developed); they present the general cell location. ...
written 10 days ago by sara_wasl0
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A database to find out which genes are expressed in which cell type of origin for human?
... I would like to find the different cell types that specific gene expressed on for human, is there any database provide that? I tried Gene Expression Atlas (https://www.ebi.ac.uk/gxa/home) but I'm not sure if it's correct because I think they do some experiments and report what cells they found that ...
gene database gene expression written 10 days ago by sara_wasl0
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Comment: C: read depth using samtools
... Thanks a lot for your help, I will try that :) ...
written 6 months ago by sara_wasl0
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read depth using samtools
... Hello all, I'm using samtools in order to get the depth of a file called file.bam, but the output I have is like this: samtools depth file.bam > output.txt 11 88911833 2 11 88911834 2 11 88911835 2 I understand that the first column is the name of the reference sequence, the s ...
samtools depth written 6 months ago by sara_wasl0 • updated 6 months ago by benformatics920
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Comment: C: Download Tumor VCF files
... I applied but even though the vcf files I cannot download them ...
written 7 months ago by sara_wasl0
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Comment: C: Download Tumor VCF files
... So, what's the solution? ...
written 7 months ago by sara_wasl0
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Download Tumor VCF files
... Hi all, Could anyone please guide me to any databases or websites that I can downloads tumor VCF files from, I tried different databases but it's very difficult and some of them require to register and when I registered the data locked (I cannot downloads anything) Any help with that please? ...
vcf varients written 7 months ago by sara_wasl0 • updated 7 months ago by jared.andrews072.7k

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Popular Question 8 days ago, created a question with more than 1,000 views. For read depth using samtools

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