User: lucas.lochovsky

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Posts by lucas.lochovsky

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Measure of SV genomic diversity in a population
... Hi everyone. I'm currently working with a set of structural variants from a set of human whole genome sequences. The sample set represents individuals from a broad range of countries, so I suspect that we are capturing a certain amount of genomic diversity that has not been captured in previous SV p ...
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Calculating neutrality statistics like Tajima D with structural variants
... I have a set of structural variant calls for a few hundred human genomes, and I'm looking to evaluate selective pressure on each chromosome. I came across the Tajima D statistic, but most of the examples of its use are on SNP data, so I have wondered if it makes sense to use Tajima D with structural ...
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Multi-part TCGA BAMs?
... I'm working with TCGA WGS BAMs through the Google Cloud Platform, and I've seen that there are files where the barcode is identical, but there is an additional number appended to the filename before the .bam extension. For example, G32450.TCGA-FD-A3N5-01A-11D-A21A-08.1.bam G32450.TCGA-FD-A3N5-01A- ...
data bam cancer written 2.3 years ago by lucas.lochovsky0 • updated 2.3 years ago by Kevin Blighe69k

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