User: harrypotterandsbt

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Posts by harrypotterandsbt

<prev • 26 results • page 1 of 3 • next >
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Comment: C: KEGG pathway enrichment analysis for wheat and barley
... Yeah! Thank you! I know the webserver. ...
written 10 months ago by harrypotterandsbt70
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Comment: C: KEGG pathway enrichment analysis for wheat and barley
... Yeah I know. But still not exactly for wheat and barley ...
written 10 months ago by harrypotterandsbt70
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KEGG pathway enrichment analysis for wheat and barley
... Hi guys! I met a problem about how to do KEGG pathway enrichemnt analysis for wheat and barley. The KEGG website doesn't have two plant species annotation file. I don't know where to find simliar resource. or should I run electrionic annotion using blastx or some tools to do these.Any ideals? Thank ...
wheat kegg barley written 10 months ago by harrypotterandsbt70
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Comment: C: The shortcoming of shiny app in building webserver
... Thank you ! your answer is also good ...
written 12 months ago by harrypotterandsbt70
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Comment: C: The shortcoming of shiny app in building webserver
... Thank you ! Your opinion is valuable! ...
written 12 months ago by harrypotterandsbt70
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Forum: The shortcoming of shiny app in building webserver
... There is topic I want discuss with everyone! The shiny is very popular R framework to quickly build a interactively webserver. But I have checked some webserver built by shiny ,and I find some shortcoming of these webserver. like wait too long time to open a website. occasionally lost connect to se ...
webserver R forum shiny written 12 months ago by harrypotterandsbt70 • updated 12 months ago by Jeremy Leipzig19k
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Is BETA suitable for plant research?
... The only one existed tool to do the RNA-seq and Chip-seq joint analysis is BETA.And I wonder if BETA can used in Plant research. Because I read the paper, it mentioned that BETA is used in mammalian genomes.Does it means that it cannot used in other species ? like plant? Any ideas? Thanks in advance ...
beta chip-seq rna-seq written 14 months ago by harrypotterandsbt70 • updated 12 months ago by Biostar ♦♦ 20
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Answer: A: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
... Thank you! colin.kern I got the the different between libarary fragment and sequence reads. But I don't understand why " these peaks will have a gap between them roughly the size of the average fragment length of your library " Are you mean that the the length of gap is 200~400bp. I thought the gap ...
written 14 months ago by harrypotterandsbt70
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Comment: C: Why Chip-seq data cross correlation plot has fragment_lenth cross correlation p
... I understand the abscissa of fragemnt length peaks. It means shift watson streand by X base them readch the max peason correlation coefficient.But I really don't know the the meaning of fragment length peaks and read-length peaks and why it has some thing to do with the peason correlation coefficien ...
written 15 months ago by harrypotterandsbt70
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Why Chip-seq data cross correlation plot has fragment_lenth cross correlation peak and read-length peaks
... Hello. I am new to Chip-seq data analysis. And I meet the problem when I study the Chip-seq quality assessment.I really can't figure out the why the corss correlation plot has two peaks which are called fragment_length corss correlation peaks and read_length peaks. What's difference between fragmen ...

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