User: kamanovae

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kamanovae0
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Posts by kamanovae

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Comment: C: How to convert a file to vcf format
... Thanks for the answer! I painted my question poorly. I need to create a file for each sample. It is necessary to get information about specific SNPs for a sample from each file of a certain chromosome and write it in a separate VCF file. I hope that there are ready-made programs for this ...
written 14 days ago by kamanovae0
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How to convert a file to vcf format
... Hello, I have a file for each chromosome that represents the following format: CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample1 Sample2 Sample3 10 62010 10:62010 C T 999 PASS SING;AA=NN;AN=CC;AD=CC GT 0|0 0|0 0|0 ...
vcf combine file written 14 days ago by kamanovae0 • updated 14 days ago by Pierre Lindenbaum122k
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Why do researchers prefer to use Oxford Nanopore Technologies' 1D and sequencing rather than 1D2 when sequencing the human genome?
... Hello everyone, I want to sequence the human genome using Oxford Nanopore Technology. I came across various papers of ONT in the year 2019 on this topic and in all studies use 1D protocols technology, not 1D2. I listed the most popular articles here: 1) https://www.nature.com/articles/nbt.4060#met ...
human genome sequencing nanopore ont written 21 days ago by kamanovae0
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How can I ran Samtools view in Cancer Genomics Cloud (Simons Genome Diversity Project)?
... Hi! I have created a project on Cancer Genomics Cloud (Simons Genome Diversity Project). Next I have downloaded SAMtools view in Apps in this project. The input file for task were : 1) The Bam file from Simons Genome Diversity Project (for example: LP6005442-DNA_B02.srt.aln.bam). As I understand th ...
cgc samtools view written 10 months ago by kamanovae0

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