User: carmen.bugarin.diz

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Answer: A: VCF files: Change Chromosome Notation
... I had this problem before and I was able to fix it while running some filters to the file. If you are performing any sort of filtering on those VCF files you could use: sed 's:chr::g' Example: vcftools --gzvcf sample.vcf.gz --keep sample_list.txt --mac 1 --recode-to-stream | sed 's:chr:: ...
written 20 days ago by carmen.bugarin.diz0 • updated 20 days ago by RamRS24k

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