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Posts by carmen.bugarin.diz
... vcftools --remove-filtered-all --recode 4751snpf.vcf > 4751PASS.vcf ...
... I had this problem before and I was able to fix it while running some filters to the file. If you are performing any sort of filtering on those VCF files you could use: sed 's:chr::g' Example: vcftools --gzvcf sample.vcf.gz --keep sample_list.txt --mac 1 --recode-to-stream | sed 's:chr:: ...
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