User: pltbiotech_tkarthi

Reputation:
180
Status:
Trusted
Location:
CIMMYT, Mexico
Last seen:
3 weeks, 2 days ago
Joined:
1 year, 4 months ago
Email:
p*****************@outlook.com

Posts by pltbiotech_tkarthi

<prev • 64 results • page 1 of 7 • next >
0
votes
0
answers
193
views
0
answers
Comment: A: Program that includes synonymous to non-synonymous ratio at nodes of phylogeneti
... I have already generated Phylogeny using NJ in MEGA, but there is no option to include Ka/Ks ratio at nodes with MEGA. So I want to generate a same phylogeny with Ka/Ks at nodes using any other software. Thanks ...
written 8 months ago by pltbiotech_tkarthi180
0
votes
0
answers
193
views
0
answers
Program that includes synonymous to non-synonymous ratio at nodes of phylogenetic tree?
... Hi All I am trying to generate a Phylogram using nucleotide sequences that should show the Ka/Ks ratio at nodes of each cluster. If anyone knows any specific software that generate the Phylogram with Ka/Ks value at nodes, please let me know. Thanks ...
sequence written 8 months ago by pltbiotech_tkarthi180
0
votes
2
answers
250
views
2
answers
Answer: A: Why some CDS is enlisted as non translating CDS at ENSEMBL (Plant) when it is ac
... Thanks Lieven Sterck for your kind reply. It's true one of the transcript that I am interested is not translated to a protein, it could be a pseudogene, thanks again for your suggestions. ...
written 8 months ago by pltbiotech_tkarthi180
3
votes
2
answers
250
views
2
answers
Why some CDS is enlisted as non translating CDS at ENSEMBL (Plant) when it is actually encoding for a protein?
... I am interested in a CDS at ENSEMBL, but I found it is Nontranslating CDS and not encoding for a protein. But for the same nucleotide sequence, putative protein is reported in NCBI based on computational annotation and translation. I would like to know, why in ENSEMBL it is enlisted as non translati ...
gene sequence written 8 months ago by pltbiotech_tkarthi180
0
votes
1
answer
350
views
1
answers
Comment: C: evolution of gene
... All the best @Learner, through your question I am also learning, thanks for your question about the concept of new gene evolution! ...
written 11 months ago by pltbiotech_tkarthi180
1
vote
1
answer
350
views
1
answers
Comment: C: evolution of gene
... I agree @jrj.healey, the evolution of a gene happened is an unanswerable question, but there must be a natural selection process in which the ancestral unstructured gene should have acquainted with mutations and structuration for the origin of new gene with further fixation of favorable alleles in a ...
written 11 months ago by pltbiotech_tkarthi180
0
votes
2
answers
637
views
2
answers
Comment: C: Number of species for positive selection analysis
... Hi rprog008, Nobody is trying to prove your answer is wrong? but you said "I know you will come up will new idea of blame game". Do I repeat this same question and statements to you. Of course without any man made procedure and human brain input, how the computer will do the analysis itself. " Ev ...
written 11 months ago by pltbiotech_tkarthi180
0
votes
2
answers
637
views
2
answers
Comment: C: Number of species for positive selection analysis
... The Research Gate conversation was about number of sequences, you can go through that Research Gate conversation again, even someone tends provide the information about the use of even 4 species at smaller scale analysis, however the same person suggested to use more than 10 sequences, which means o ...
written 11 months ago by pltbiotech_tkarthi180
0
votes
2
answers
637
views
2
answers
Comment: C: Number of species for positive selection analysis
... I know that one should use large data set than smaller ones. My question is not that, how you can claim that one should not use less than 10 species as you have written here? Even you can see above from the statements of sammy.ich17 stated "For instance some papers used single copy ortholog alignme ...
written 11 months ago by pltbiotech_tkarthi180
1
vote
0
answers
435
views
0
answers
How to extract genomic positions of SNPs using snp-sites?
... By using snp-sites (https://github.com/sanger-pathogens/snp-sites) I extracted the SNPs with Linux command: snp-sites file name.fasta. This script just extracting the SNPs without position information. I know the genomic positions of my reference sequence. My question is: How to add the genomic posi ...
genome alignment snp sequencing written 11 months ago by pltbiotech_tkarthi180

Latest awards to pltbiotech_tkarthi

Scholar 11 weeks ago, created an answer that has been accepted. For A: mean Tajima's D value
Popular Question 4 months ago, created a question with more than 1,000 views. For How to extract SNPs from multiple alignment fasta file?
Scholar 15 months ago, created an answer that has been accepted. For A: mean Tajima's D value

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 720 users visited in the last hour