User: hesse.sebastian

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Posts by hesse.sebastian

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ComBat correction with one batch containing only one sample - keep or remove?
... I am using sea analysis and combat to correct a proteome dataset. During the correction process ComBat tells me that one batch contains only one sample. Apparently this leads to a modification of the method used: > Note: one batch has only one sample, setting mean.only=TRUE My question is of th ...
proteome sva combat R written 5 weeks ago by hesse.sebastian0
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Comment: C: About BatchQC packages error
... I get the same error! A google search suggested it might be due to missing values (NAs), however I have none. Also used the raw data (instead of log2) and performed a quantile normalization. Also I checked if all samples in the expression matrix are annotated: they are. But still I get the same e ...
written 8 weeks ago by hesse.sebastian0
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Comment: C: Fold change - a final explanation
... Thanks a lot for your detailed and insightful corrections! ...
written 9 weeks ago by hesse.sebastian0
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Fold change - a final explanation
... A colleague of mine and I have just been discussing the meaning of fold changes and though this question has been asked before non of the answers are actually as straight forward as needed so lets try here to solve this once and for all. I list here what I understand so far and will update it from ...
rna-seq written 9 weeks ago by hesse.sebastian0 • updated 9 weeks ago by jomo018450

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