User: imda

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imda10
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New User
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1 month, 1 week ago
Joined:
1 year, 7 months ago
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i***@xanum.uam.mx

Posts by imda

<prev • 46 results • page 1 of 5 • next >
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Help with bowtie2 aligning PE Radseq sequences to reference genome
... Hello all, I have in a folder Radseq paired-end sequences from 300 plants. I am trying to align those PE sequences in loop mode to the reference genome but I have not had success. Could you help me? This is de loop command that I am using for this but it does not work for f in /home/icruz/data/ ...
genome bowtie2 radseq mapping illumina written 4 months ago by imda10
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Help with Python script
... Dear all, I am trying to use a program called phyphy. This program runs into python. I would like to create a script that can run in all my files. i. e., in the line `e = Extractor("/path/to/FEL.json")` the program uses a file in .json format but I have thousands of .json files. So, I want to create ...
python script written 8 months ago by imda10 • updated 8 months ago by genomax83k
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Answer: A: How to edit name/ID in a newick tree format
... Sorry, I another tree, I already have realized that some IDS did not change. In particular "DaturastramoniumTeo1_date29029" and "DaturastramoniumTic23_dati18250" Do you know why? (pin9322:0.0604111,((nta31317:0.0366408,nta31450:0.0580446)n2:0.0713836,((stu15449:0.0100372,(sly17389:5e-09,spim16755: ...
written 8 months ago by imda10
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Answer: A: How to edit name/ID in a newick tree format
... Thank you very much, this worked well! ...
written 8 months ago by imda10
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How to edit name/ID in a newick tree format
... Hi there, I am trying to edit a newick tree. This is my tree (Solanumtuberosum_stu4396:0.10246,(Solanumtuberosum_stu4462:0.0388307,(Solanumtuberosum_stu4373:0.134577,Solanumtuberosum_stu4418:0.0203854)n2:0.0314355)n1:0. 10246)n0; And, I would like to remove the first part of the Ids "Solanumtube ...
format newick written 8 months ago by imda10
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Comment: C: Using awk or sed to edit a column in a gtf file
... thank you, I could remove mRNA part ...
written 11 months ago by imda10
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Comment: C: Using awk or sed to edit a column in a gtf file
... This worked awesome for me thank you! ...
written 11 months ago by imda10
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Using awk or sed to edit a column in a gtf file
... Dear all, I have a gft file and I want to remove a cenrtaind word in a certain column: In this case I want to remove in the second column "mRNA." and just to keep CA01g00010 in this column, could you help me with this? Pepper1.55ch01 mRNA.CA01g00010 63209 63880 I would like this output ...
awk sed gft linux written 11 months ago by imda10 • updated 11 months ago by geek_y11k
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Comment: C: Do you know some way to remove the stop codons in an alignment and replace the s
... Yes, I already have read that. its a nightmare trying to generate the batch files for hyphy. ...
written 12 months ago by imda10
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Comment: C: Do you know some way to remove the stop codons in an alignment and replace the s
... Thank you! I am trying using Pal2nal... ...
written 12 months ago by imda10

Latest awards to imda

Popular Question 8 months ago, created a question with more than 1,000 views. For How to get proteins from GFF file resulted from MAKER annotation
Supporter 12 months ago, voted at least 25 times.

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