User: anasjamshed1994

Reputation:
20
Status:
New User
Location:
Last seen:
16 hours ago
Joined:
2 years ago
Email:
a**************@gmail.com

Posts by anasjamshed1994

<prev • 85 results • page 1 of 9 • next >
0
votes
0
answers
49
views
0
answers
Distance matrix based on the whole input alignment
... I want to compute the distance matrix based on the whole input alignment file strain.maf. The .maf file contains the multi-alignment of 119 genomes. It is downloaded from the UCSC Genome Browser I have tried this script: from Bio.Phylo.TreeConstruction import DistanceCalculator from Bio im ...
python alignment biopython written 1 day ago by anasjamshed199420 • updated 1 day ago by ATpoint40k
0
votes
1
answer
60
views
1
answers
Comment: C: biopython script to alingn mutiple sequences
... yes my sequence contains J ...
written 6 days ago by anasjamshed199420
0
votes
1
answer
60
views
1
answer
biopython script to alingn mutiple sequences
... this script is supposed to loop through all the sequences present in CSV file and make pairwise alignment with all of them : from Bio.SubsMat import MatrixInfo as matlist from Bio import pairwise2 from Bio.pairwise2 import format_alignment from Bio.Seq import Seq import pandas a ...
python biopython written 6 days ago by anasjamshed199420 • updated 6 days ago by Istvan Albert ♦♦ 85k
0
votes
1
answer
177
views
1
answers
Comment: C: Python script for text matching
... https://ibb.co/r7Yc7Y8 ...
written 6 weeks ago by anasjamshed199420
0
votes
1
answer
177
views
1
answers
Comment: C: Python script for text matching
... I want to highlight multiple motifs ...
written 6 weeks ago by anasjamshed199420
1
vote
1
answer
177
views
1
answer
Python script for text matching
... I have one fasta file which has 30 sequences and pattern file which contain different motifs. I need to match my motifs with fasta sequences and location in which it is authenticated should be highlight like this : ![enter image description here][1] [1]: https://scontent.fkhi8-1.fna.fbcdn.net/ ...
fasta python regex written 6 weeks ago by anasjamshed199420 • updated 6 weeks ago by fishgolden450
0
votes
1
answer
248
views
1
answers
Comment: C: PPI Analysis in String Database
... how brother I don't understand the procedure? ...
written 11 weeks ago by anasjamshed199420
0
votes
1
answer
248
views
1
answers
Comment: C: PPI Analysis in String Database
... i dont copy paste it comes from tobtable functions in R ...
written 11 weeks ago by anasjamshed199420
3
votes
1
answer
248
views
1
answer
PPI Analysis in String Database
... I put my 502 DEGS in string database to analyze PPI and 474 appears in my network now I want to select DEGS with the threshold score (median confidence) >0.4 but unable to do this REG1A FSTL3 AFAP1L2 HCST TNMD IFNLR1 SERINC5 TRIL ATP6V0A4 TSPYL5 C1QB ...
ppi string cytoscape written 11 weeks ago by anasjamshed199420 • updated 11 weeks ago by scooter380
0
votes
1
answer
335
views
1
answers
Comment: C: RNA Seq Analysis in R
... and Kevin is my brother and I don't want to disrespect him at any cost ...
written 12 weeks ago by anasjamshed199420

Latest awards to anasjamshed1994

Popular Question 19 months ago, created a question with more than 1,000 views. For Python Script to to convert orf gene into protein
Popular Question 19 months ago, created a question with more than 1,000 views. For Python Script to Calculate Total Number of genes

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1098 users visited in the last hour