User: Israel Barrantes

Reputation:
740
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Trusted
Location:
Germany
Twitter:
Limenian
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Google Scholar Page
Last seen:
6 days, 5 hours ago
Joined:
9 years, 1 month ago
Email:
i**********@gmail.com

Posts by Israel Barrantes

<prev • 67 results • page 1 of 7 • next >
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Comment: C: Looking for tools to simulate expression data (RNAseq, proteomic, arrays)
... Thank you for your input. Yes, in many cases you can obtain such datasets from public sources (GEO, ArrayExpress, ENCODE and so on), but not in every case. Therefore the question. ...
written 11 months ago by Israel Barrantes740
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Looking for tools to simulate expression data (RNAseq, proteomic, arrays)
... I'm looking for tools to simulate expression data (RNAseq, proteomic, arrays), especially generating tissue-, organ- and/or species- specific datasets. Better if the data is already quantified (e.g. mapped read count tables instead of simulation of FASTQ Illumina data). Comments/experiences apprecia ...
proteomics simulation microarrays rna-seq written 11 months ago by Israel Barrantes740
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Comment: C: Human and animal (mouse) expression datasets for the same tissues
... Awesome, thanks a bunch! ...
written 12 months ago by Israel Barrantes740
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Human and animal (mouse) expression datasets for the same tissues
... I'm looking for publicly available expression datasets with at least 4 samples, as follows: + tissue1 for human + tissue2 for human + tissue1 for some animal + tissue2 for some animal And having two conditions (control and treatment) for each tissue (tissue1, tissue2... tissueN) It'd be great ...
public datasets mouse microarrays human rna-seq written 12 months ago by Israel Barrantes740
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Job: PhD scholarship in Bioinformatics, Rostock University Medical Center, Rostock, Germany
... The Institute for Biostatistics and Informatics in Medicine and Ageing Research at the Rostock University Medical Center (Germany) seeks a highly qualified candidate for a PhD scholarship with a focus on bioinformatics (NGS/omics) analyses. Your tasks: - Intervention effect analyses using omics da ...
position job scholarship written 23 months ago by Israel Barrantes740 • updated 23 months ago by genomax70k
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Comment: C: SNP analysis between two bacterial genomes
... OP said bacterial. The papers you added are for diploid or polyploid genomes, and therefore not suitable. ...
written 2.2 years ago by Israel Barrantes740
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Answer: A: SNP analysis between two bacterial genomes
... Use programs that have been specifically made for bacterial genomes, like [Breseq][1] (from FASTQs) or [Snippy][2] (from either FASTAs or FASTQs). In the [Breseq paper][3] you'll find the reasons why it's wrong to use programs that do not natively support haploid genomes. [1]: http://barricklab. ...
written 2.2 years ago by Israel Barrantes740
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Comment: C: Frequency of a unique sequence in a fasta file
... Step #2 doesn't work ...
written 2.5 years ago by Israel Barrantes740
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Answer: A: Searching for a site or program that can do functional annotation not being blas
... See here: https://www.biostars.org/p/163980/#164095 ...
written 2.8 years ago by Israel Barrantes740
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Comment: C: Establishing a Core Bioinformatics Facility
... See also: https://www.biostars.org/p/9739/ ...
written 2.8 years ago by Israel Barrantes740

Latest awards to Israel Barrantes

Prophet 5 months ago, created a post with more than 20 followers. For Creating A New Bioinformatics Unit
Popular Question 5 months ago, created a question with more than 1,000 views. For Probability Of Expression Changes 2-, 5-, ...100-Fold
Great Question 8 months ago, created a question with more than 5,000 views. For Demultiplex Illumina With Barcodes On Identifier Line
Scholar 22 months ago, created an answer that has been accepted. For A: Need a software to batch convert .gb files to fasta format
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Pan- and core- genome in bacteria
Epic Question 2.6 years ago, created a question with more than 10,000 views. For Demultiplex Illumina With Barcodes On Identifier Line
Good Answer 3.3 years ago, created an answer that was upvoted at least 5 times. For A: What Are The Classic Papers In Bioinformatics?
Appreciated 3.6 years ago, created a post with more than 5 votes. For A: What Are The Classic Papers In Bioinformatics?
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: What Are The Classic Papers In Bioinformatics?
Great Question 4.4 years ago, created a question with more than 5,000 views. For Demultiplex Illumina With Barcodes On Identifier Line
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Creating A New Bioinformatics Unit
Appreciated 5.4 years ago, created a post with more than 5 votes. For A: What Are The Classic Papers In Bioinformatics?
Appreciated 5.4 years ago, created a post with more than 5 votes. For Creating A New Bioinformatics Unit
Librarian 5.4 years ago, created a post with more than 10 bookmarks. For Creating A New Bioinformatics Unit
Good Question 5.4 years ago, asked a question that was upvoted at least 5 times. For Creating A New Bioinformatics Unit
Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: What Are The Classic Papers In Bioinformatics?
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Creating A New Bioinformatics Unit
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Demultiplex Illumina With Barcodes On Identifier Line
Voter 5.4 years ago, voted more than 100 times.
Supporter 5.4 years ago, voted at least 25 times.
Teacher 5.4 years ago, created an answer with at least 3 up-votes. For A: What Are The Classic Papers In Bioinformatics?
Student 5.4 years ago, asked a question with at least 3 up-votes. For Probability Of Expression Changes 2-, 5-, ...100-Fold
Student 5.4 years ago, asked a question with at least 3 up-votes. For Creating A New Bioinformatics Unit
Student 5.4 years ago, asked a question with at least 3 up-votes. For Demultiplex Illumina With Barcodes On Identifier Line

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