User: andrebolerbarros

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Posts by andrebolerbarros

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vegan:adonis with random effects?
... Hi everyone, Do you know if adonis from vegan package allows for random effects? If not, is there any function able to perform PERMANOVA with random effects? Thanks in advance ...
microbiome 16s metagenomics written 4 days ago by andrebolerbarros0
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Receptor-Ligand Affinity Prediction - Suggestions
... Hello everyone, I have a 3d structure of a receptor and I would like to get info about a possible ligand from several databases. Does anyone have any suggestion concerning software for this purpose? Cheers, André ...
receptor-ligand prediction written 12 weeks ago by andrebolerbarros0
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Different % alignment in Log Final & sum of ReadsPerGene
... Hi everyone, I'm using STAR to align my reads against Mus musculus genome. After aligned, I'm using the Log.final.out to assess the quality of the assessment (% uniquely mapped, etc.). Considering I want to use gene counts to import in DESeq2, I use the corresponding `--quantMode GeneCounts` option ...
star written 9 months ago by andrebolerbarros0 • updated 9 months ago by swbarnes27.4k

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