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Posts by daniellemo
... Hi there, I am trying to do a differential methylation analysis of probes in R using "days to death" as my clinical factor. I have values ranging from 9 to 3258 days and need to make contrasts between these values, but there are too many values to do this manually. Is there a automatic way to contr ...
... I am trying to download GenomeStudio for the purposes of analyzing methylation data. I am having difficulties with the download, and am wondering if this software is supported on a MacBook? It seems that the installer for the methylation module is in a format that is not supported for my computer. I ...
GDC legacy archive: get sample sheet containing sample_group and sample_ source for methylation data
... I am trying to follow the data cleaning workflow published in "A cross-package Bioconductor workflow for analyzing methylation array data", however some of the analyses require a sample sheet containing the sample source and sample group for each sample. I downloaded my methylation data from the GDC ...
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