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Posts by amithasandur
Comment: C: rsem prepare-reference error
... What is the transcripts fasta here? For my case in command line, I have just provided the mouse gtf file (on 1st line) and primary assembly fa file (on 6th line).. Not sure what "/ref/mouse_ensembl.transcripts.fa" is supposed to mean?? Is it trying to generate these files or locate them? If so w ...
... Hi there, I am trying to run "rsem-prepare-reference" using the options below: rsem-prepare-reference commands: rsem-prepare-reference --gtf path/to/gtf_file \ --star \ --star-path path/to/STAR \ --star-sjdboverhang 99 \ -p 8 \ path/to/primary_asse ...
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