User: Will

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Will0
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Posts by Will

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Simple integrative DNA methylation and mRNA expression analysis
... No, my biology teacher is not specialised in bioinformatics, I knew my project would be independently led. Thanks a lot for your help, Kevin! ...
written 9 months ago by Will0
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Methylation at probe level and gene expression correlation
... Hi everyone, sorry about the long query, Due to my lack of programming background, I've been trying to use MethHC (http://methhc.mbc.nctu.edu.tw/php/search.php?opt=gene) to find the correlation between gene expression and methylation in breast cancer. With MethHC, the user inputs a gene and the cor ...
gene expression tcga methylation written 9 months ago by Will0
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Comment: C: Simple integrative DNA methylation and mRNA expression analysis
... Dear Kevin, Thanks so much for all your replies and help thus far, but as I am not familiar with the workflow, I'm not completely understanding so would you mind providing clarification. Am I supposed to use UCSC data to obtain methylation and expression value in R, then correlate them? Can I also ...
written 9 months ago by Will0
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Comment: C: Correlation between gene expression and methylation
... Hi Devon, I am looking at a similar exploration to tujuchuanli's. Would you mind explaining what you meant by a per-gene comparisons/what would that look like? ...
written 9 months ago by Will0
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Comment: A: Correlation between methylation (450K) and gene expression (RNA-Seq)
... Hi, did you ever find a solution to this? Please help! ...
written 9 months ago by Will0
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Comment: C: Simple integrative DNA methylation and mRNA expression analysis
... Thank you so so much! However, terribly sorry for ignorance, would this produce a trend line? Or a box plot between normal and tumour tissue? Would I be able to apply chi squared tests and such? Will I be able to simply work with Excel with UCSC? ...
written 9 months ago by Will0
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Simple integrative DNA methylation and mRNA expression analysis
... Hi everyone, This is my first exposure to bioinformatics, so please bear with me. For a HS assignment, I chose DNA methylation and breast cancer as my topic. I want to explore the correlation between DNA methylation and gene expression in cancer but am overwhelmed with data such as TCGA. Thus I am ...
dna methylation rna-seq data integration written 9 months ago by Will0 • updated 9 months ago by Kevin Blighe47k

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