User: kieran.short

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Posts by kieran.short

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Comment: A: Diffbind error : sequences from an unspecified genome; no seqlengths
... I'm having the same problem as erwan.scaon. DiffBind ver 2.10.0. I used MACS2 to generate peaks. I get "seqinfo: <> sequences from an unspeficied genome; no seqlengths" I too am using your instructions by example Rory: https://bioconductor.org/packages/release/bioc/vignettes/DiffBind/inst/doc ...
written 3 months ago by kieran.short0 • updated 3 months ago by ATpoint26k
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Hisat2 - combining several novel-splicesite-outfile lists from biological replicates ?
... Hi all, I'm doing a 2-pass mapping of RNAseq reads to an mm10 index using Hisat2 in a shell scripted loop. This question relates to combining several --novel-splicesite-outfile splice site lists from a bunch of biological replicate reads, to use as a single --novel-splicesite-infile for all the bi ...
genome rna-seq written 12 months ago by kieran.short0

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