User: jomagrax

gravatar for jomagrax
jomagrax30
Reputation:
30
Status:
New User
Location:
Spain
Last seen:
2 days, 9 hours ago
Joined:
1 year, 5 months ago
Email:
j*************@gmail.com

Posts by jomagrax

<prev • 33 results • page 1 of 4 • next >
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Answer: A: Which one of these sRNA prediction tools is better?
... I have heavily considered using APERO but I don´t know If It can be used with single-end data as mine. ...
written 22 days ago by jomagrax30
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Which one of these sRNA prediction tools is better?
... Hi everyone! Im trying to analyce a small RNA-seq, for the sRNA identification of bacteria I've found a lot of tools, so many in fact that I'm a little overwhelm, these are the ones I've found; APERO, DETR’PROK, sRNA-Detect, TLA from RNA-eXpress, Rockhopper, ANNOgesic and the two in-house GL and ...
rna-seq srna written 23 days ago by jomagrax30
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Comment: C: Mirdeep2 Error: FASTA reads file is not in accordance with the fasta format spec
... Thanks for your response, but then, how can we change our .fa files to fit the mirdeep2 description? ...
written 5 weeks ago by jomagrax30
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Answer: A: mirdeep2 mapped reference error
... The problem was that the genome had blankspaces, wich you can remove with sed 's/[[:blank:]]//g' genome.fa ...
written 5 weeks ago by jomagrax30
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mirdeep2 mapped reference error
... Hi everyone! after succesfully indexed the reference genome with bowti-build and mapped with mapper.pl mapper.pl /home/superuser/jose/TFG/rawdata/control_1_trimmed.fastq -e -h -i -j -m -p /home/superuser/CAP-miRSEQ/ref/pig_genome.fa -s pig_control_1_collapsed.fa -t pig_control_1_vs_genome.ar ...
rna-seq mirdeep2 written 6 weeks ago by jomagrax30
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Answer: A: How to upgrade R version in ubuntu?
... I copied the binary from `/usr/lib/R/bin/R` to `/usr/bin/` with cp /usr/lib/R/bin/R /usr/bin/ And It seems to work ...
written 8 weeks ago by jomagrax30
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Comment: C: How to upgrade R version in ubuntu?
... # deb http://es.archive.ubuntu.com/ubuntu/ xenial main restricted deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/ # deb http://es.archive.ubuntu.com/ubuntu/ xenial-updates main restricted # deb http://security.ubuntu.com/ubuntu xenial-security main restricted ...
written 8 weeks ago by jomagrax30
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Comment: C: How to upgrade R version in ubuntu?
... I have followed the instructions, It seems Its correctly installed in `/usr/lib/R/bin/R` but It does not open when I just type `R` ...
written 8 weeks ago by jomagrax30
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Comment: C: How to upgrade R version in ubuntu?
... It seems that I have ububtu 16.04 Description: Ubuntu 16.04.6 LTS Release: 16.04 ...
written 9 weeks ago by jomagrax30
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Comment: C: How to upgrade R version in ubuntu?
... I did as you say and now It seems that I cant call R, as I obtain; $ R The program 'R' is currently not installed. You can install it by typing: sudo apt install r-base-core $ sudo apt install r-base-core [sudo] password for superuser: Reading package lists... Done Build ...
written 9 weeks ago by jomagrax30

Latest awards to jomagrax

Scholar 5 weeks ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2
Scholar 8 weeks ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2
Scholar 9 weeks ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2

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