User: jomagrax

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jomagrax0
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Posts by jomagrax

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TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
... Hi Im Jose! This is my first time using TopGO and Im having problems generating the GOdata object in R, thank you all in advance, This is the code Im using # 1. Data preparation: List of genes identifiers, gene scores, list of differentially expressed genes, gene-to-GO annotations are all c ...
R topgo rna-seq written 9 days ago by jomagrax0
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Comment: C: How to compare several ASCII files in LINUX
... Ok, so finally I got $ comm -12 <(cut -f1 apple.conditionA) <(cut -f1 apple.conditionB apple.conditionC) I dindn´t know process Substitution structures existed, thank you very very much!! ...
written 6 weeks ago by jomagrax0
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Comment: C: How to compare several ASCII files in LINUX
... I think I have It, $ cut -f1 apple.conditionA > compare | cut -f1 apple.conditionB apple.conditionC > tocompare $ comm -12 compare tocompare This way I need to create two files and to use two lines, but I can't think of anything else. ...
written 6 weeks ago by jomagrax0 • updated 6 weeks ago by RamRS19k
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Comment: C: How to compare several ASCII files in LINUX
... Yes, exactly! Thanks ...
written 6 weeks ago by jomagrax0
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Comment: C: How to compare several ASCII files in LINUX
... MDP0000303933 MDP0000303933 chr1 - 4276 5447 This is for instance the first line of the apple.conditionA file, on the first column we can see the gene name, the second column has de RNA read that was sequenced and asigned to the gene specified in colum one, the remaining c ...
written 6 weeks ago by jomagrax0
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Comment: C: How to compare several ASCII files in LINUX
... Ok, I hope It´s clear now. Thank you for yor your time ...
written 6 weeks ago by jomagrax0
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Comment: C: How to compare several ASCII files in LINUX
... Ok sorry, the files have all the same structure with several colums, I need to compare the first colum of all of them (where the gene names are) and then extract the unique genes of a concrete file. ...
written 6 weeks ago by jomagrax0
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How to compare several ASCII files in LINUX
... Hi everyone, I have several ASCII files containing genes expressed in different experimental conditions ( apple.conditionA apple.conditionB apple.conditionC ) The first column of all of them conteins the gene name, the other colums have information like the chromosome where It is, the direction etc. ...
rna-seq linux written 6 weeks ago by jomagrax0

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