User: jomagrax

gravatar for jomagrax
jomagrax30
Reputation:
30
Status:
New User
Location:
Spain
Last seen:
3 weeks, 1 day ago
Joined:
2 years, 2 months ago
Email:
j*************@gmail.com

Posts by jomagrax

<prev • 36 results • page 1 of 4 • next >
0
votes
0
answers
105
views
0
answers
How to download NCBI nulceotide collection database
... Hi everyone! Im performing 18S taxonomy analysis with qiime2, and I would like to download the ncbi sequences and it's associated taxonomy, if that's possible. Thanks in advance, Jose. ...
ncbi download written 27 days ago by jomagrax30
1
vote
1
answer
221
views
1
answers
Answer: A: How to perform GO enrichment analysis on sRNA-seq
... The key is to change the common name of the protein to de ID given by the GenBank annotation file in tabular formar, under the column "Protein.product", which is recognible ID by PANTHER. I got a lot of help from the folks of StackOverflow for the coding, If you have any question just hit me up!! ...
written 7 months ago by jomagrax30
1
vote
1
answer
221
views
1
answer
How to perform GO enrichment analysis on sRNA-seq
... Hi everyone. I carried out a bacterial sRNA identification analysis with [APERO][1], as a result I obtained a table with protein names coming from the annotation file, for instante; "NAD(P)-dependent oxidoreductase", "thiol reductant ABC exporter subunit CydD" or "DNA translocase FtsK". I tried u ...
go rna-seq written 7 months ago by jomagrax30
0
votes
2
answers
344
views
2
answers
Answer: A: Which one of these sRNA prediction tools is better?
... I have heavily considered using APERO but I don´t know If It can be used with single-end data as mine. ...
written 10 months ago by jomagrax30
1
vote
2
answers
344
views
2
answers
Which one of these sRNA prediction tools is better?
... Hi everyone! Im trying to analyce a small RNA-seq, for the sRNA identification of bacteria I've found a lot of tools, so many in fact that I'm a little overwhelm, these are the ones I've found; APERO, DETR’PROK, sRNA-Detect, TLA from RNA-eXpress, Rockhopper, ANNOgesic and the two in-house GL and ...
rna-seq srna written 10 months ago by jomagrax30
1
vote
2
answers
2.8k
views
2
answers
Comment: C: Mirdeep2 Error: FASTA reads file is not in accordance with the fasta format spec
... Thanks for your response, but then, how can we change our .fa files to fit the mirdeep2 description? ...
written 11 months ago by jomagrax30
1
vote
1
answer
231
views
1
answers
Answer: A: mirdeep2 mapped reference error
... The problem was that the genome had blankspaces, wich you can remove with sed 's/[[:blank:]]//g' genome.fa ...
written 11 months ago by jomagrax30
1
vote
1
answer
231
views
1
answer
mirdeep2 mapped reference error
... Hi everyone! after succesfully indexed the reference genome with bowti-build and mapped with mapper.pl mapper.pl /home/superuser/jose/TFG/rawdata/control_1_trimmed.fastq -e -h -i -j -m -p /home/superuser/CAP-miRSEQ/ref/pig_genome.fa -s pig_control_1_collapsed.fa -t pig_control_1_vs_genome.ar ...
rna-seq mirdeep2 written 11 months ago by jomagrax30
0
votes
1
answer
969
views
1
answers
Answer: A: How to upgrade R version in ubuntu?
... I copied the binary from `/usr/lib/R/bin/R` to `/usr/bin/` with cp /usr/lib/R/bin/R /usr/bin/ And It seems to work ...
written 11 months ago by jomagrax30
0
votes
1
answer
969
views
1
answers
Comment: C: How to upgrade R version in ubuntu?
... # deb http://es.archive.ubuntu.com/ubuntu/ xenial main restricted deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/ # deb http://es.archive.ubuntu.com/ubuntu/ xenial-updates main restricted # deb http://security.ubuntu.com/ubuntu xenial-security main restricted ...
written 11 months ago by jomagrax30

Latest awards to jomagrax

Popular Question 7 months ago, created a question with more than 1,000 views. For TopGO Error in .local(.Object, ...) : allGenes must be a factor with 2 levels
Popular Question 7 months ago, created a question with more than 1,000 views. For How to join DESeq2 object "res" to the gene annotation with dplyr?
Scholar 7 months ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2
Scholar 11 months ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2
Scholar 11 months ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2
Scholar 11 months ago, created an answer that has been accepted. For A: Trouble installing mapper.pl from mirdeep2

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1647 users visited in the last hour