User: Neo

gravatar for Neo
Neo200
Reputation:
200
Status:
New User
Location:
australia
Last seen:
8 years, 8 months ago
Joined:
9 years, 2 months ago
Email:
s**********@gmail.com

Posts by Neo

<prev • 7 results • page 1 of 1 • next >
3
votes
1
answer
1.1k
views
1
answer
Reposting Ongoing Genome Project Debate
... what do you think? if a genome sequencing project is listed as ongoing on entrez, would it not prevent institutes from sequencing the same/similar strains by error? or will it just lead to people rushing to publish? ...
genome project written 8.7 years ago by Neo200 • updated 8.7 years ago by Haibao Tang3.0k
0
votes
4
answers
17k
views
4
answers
Comment: C: Genome Wide Cog Assignment
... sorry but I tried megan and found that it already needs a blast result and that it would just extract the cog hit from it (if present). it definitely does not seem to be the program if we start with sequence data and want to assign cogs :( ...
written 8.7 years ago by Neo200
0
votes
4
answers
6.4k
views
4
answers
Answer: A: List Of Completed Genome Projects And Metagenomics Projects
... Hi, just a quick question relating to this... how do we submit 'in progress' genome projects to the entrez genome project's list? if a project is listed as ongoing, would it not prevent institutes from sequencing the same/similar strains by error? ...
written 8.7 years ago by Neo200
6
votes
2
answers
2.3k
views
2
answers
Sanger Sequencing Gaps For Genome Closure?
... hi all, just wondering if anyone has used sanger sequencing to brige/close the gap between two contigs that have been generated as a result of 454-newbler for prokaryotic genomes? i.e. when contig reordering programs are used to tile 454 contigs against reference genomes, they tend to push many con ...
sanger sequencing written 9.1 years ago by Neo200 • updated 8.7 years ago by 2184687-1231-83-5.0k
0
votes
4
answers
17k
views
4
answers
Comment: C: Genome Wide Cog Assignment
... I have been frantically searching on the web for tools that let us do this. found this paper describing 'Augur proteomics pipeline' that claims to doit but is currently offline. Thanks for all your input guys. ...
written 9.2 years ago by Neo200
8
votes
3
answers
3.8k
views
7 follow
3
answers
Contig Reordering With Multiple Reference Genomes
... Hi all, Im not sure if my previous post on the same topic was posted right. so here I go again. I have tried re-ordering 454 derived contigs from the bacterial genome Im working with, using mauve (with one reference genome). however, I would now like to use multiple reference genomes to reduce gaps ...
genome assembly contigs written 9.2 years ago by Neo200 • updated 9.2 years ago by Ketil4.0k
34
votes
4
answers
17k
views
9 follow
4
answers
Genome Wide Cog Assignment
... Hi guys, I am working with a bacterial genome (454) at the moment and would like to assign COG functional classification for all the 5000 or so genes. I have used the 'rast' web server to annotate this genome. I have written to NCBI about the cognitor program but they tell me that it is no longer su ...
genome annotation written 9.2 years ago by Neo200 • updated 2.6 years ago by Biostar ♦♦ 20

Latest awards to Neo

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2025 users visited in the last hour