User: mbk0asis

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mbk0asis350
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Korea, Republic Of
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3 days, 13 hours ago
Joined:
6 years, 1 month ago
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Posts by mbk0asis

<prev • 108 results • page 1 of 11 • next >
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Comment: C: How to get plasmid or costruct sequence from fastq file in c.elegans Whole-genom
... Map the fastq on construct. Extract mapped reads. Trim off the plasmid sequences. Map the remaining part of genomic sequence to reference genome. That's my rough idea. ...
written 4 days ago by mbk0asis350
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Can I combine sessions saved in UCSC genome browser?
... Hi. UCSC genome browser let us save genomic data as 'sessions' and access the data anytime anywhere. I really like the feature, but sometimes I need to compare data saved in different sessions. I wonder if there is a way to combine UCSC genome browser sessions to load multiple sessions in one page ...
sessions ucsc genome browser written 4 days ago by mbk0asis350
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Comment: C: How to get plasmid or costruct sequence from fastq file in c.elegans Whole-genom
... If the plasmids were integrated into the genome and you ran whole genome sequencing, certain reads will have hybrid sequences (part of plasmid + part of genomic sequence). Then, you go though your reads possessing the plasmid sequences, and some of them will have the hybrid sequences which are the ...
written 5 days ago by mbk0asis350
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Comment: C: How to get plasmid or costruct sequence from fastq file in c.elegans Whole-genom
... If I were you, I think I would do something like below. 1. Extract flanking sequences of plasmid sequences from whole genome sequencing fastq files. 2. Blat the flanking sequences. ...
written 6 days ago by mbk0asis350
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Comment: C: Blast many read sequences
... +1 for "fastq-screen" ...
written 17 days ago by mbk0asis350
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Comment: C: split text file in multiples text files
... if you want to save each line into a separate file, cat file.txt | while read line; do echo $line > $line.txt ; done ...
written 17 days ago by mbk0asis350
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Comment: C: Which repository is more appropriate to submit for cancer cell line (bulk) RNA-s
... If I remember correctly, SRA and ENA mirror each other to sync the data. So I think it's a matter of personal preference. ...
written 17 days ago by mbk0asis350
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(Closed) How to convert series of numbers to ranges?
... Hi, all! Is there a way to print the ranges from series of numbers using bash commands. For example, 1,2,3,6,7,8 to 1-3,6-8. Thank you! ...
bash linux written 25 days ago by mbk0asis350
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View gene list in GAGE enriched terms
... Hi. I just ran "GAGE" to identified GO terms enriched in DEGs. The results showed the terms and statistics, but not the genes included in each term. Is there a way to obtain the gene list in each term? Thank you! ...
gene ontology gsea gage written 7 weeks ago by mbk0asis350
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Comment: C: Deseq2 Differentially Expressed Genes between conditions
... I usually do like below. > conds <- c("Control","KD","OE","Control","KD","OE","Control","KD","OE") > coldat=DataFrame(conds=factor(conds)) > dds <- DESeqDataSetFromMatrix(countData = countData, colData = colData, design = ~ type) > res <- results(dds, ...
written 11 weeks ago by mbk0asis350

Latest awards to mbk0asis

Popular Question 12 days ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Centurion 25 days ago, created 100 posts.
Popular Question 10 weeks ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 5 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Scholar 5 months ago, created an answer that has been accepted. For A: select DE genes
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Subsetting DESeq2 results by padj quantity
Student 9 months ago, asked a question with at least 3 up-votes. For Pairwise2 - Biopython - weird local alignment results
Popular Question 9 months ago, created a question with more than 1,000 views. For fasta - reverse complement sequence
Popular Question 11 months ago, created a question with more than 1,000 views. For fasta - reverse complement sequence
Scholar 11 months ago, created an answer that has been accepted. For A: select DE genes
Popular Question 15 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
Great Question 16 months ago, created a question with more than 5,000 views. For Finding a sequence in a fasta file
Popular Question 16 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
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Popular Question 19 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
Popular Question 22 months ago, created a question with more than 1,000 views. For Pairwise2 - Biopython - weird local alignment results
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