User: mbk0asis

gravatar for mbk0asis
mbk0asis510
Reputation:
510
Status:
Trusted
Location:
Korea, Republic Of
Last seen:
4 days, 12 hours ago
Joined:
7 years, 10 months ago
Email:
m*******@gmail.com

about me

Posts by mbk0asis

<prev • 141 results • page 1 of 15 • next >
0
votes
1
answer
107
views
1
answers
Comment: C: Error in WGCNA packages installation in R?
... Type 'sessionInfo()', and post the output here. That could be helpful for experts (not me) to solve your problem. ...
written 4 days ago by mbk0asis510
0
votes
1
answer
107
views
1
answers
Comment: C: Error in WGCNA packages installation in R?
... Check the pages below! [WGCNA installation][1] [FAQ][2] [1]: https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/#cranInstall [2]: https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/faq.html ...
written 8 days ago by mbk0asis510
0
votes
1
answer
78
views
1
answers
Comment: C: mapIDs (AnnotationDBi) returns shorter list of IDs than input IDs
... Thank you for reply! So you're saying is that Ensembl has multiple ID for a Entrez annotation? Am I understanding right? Then how would you handle those situations? ...
written 16 days ago by mbk0asis510
2
votes
1
answer
78
views
1
answer
mapIDs (AnnotationDBi) returns shorter list of IDs than input IDs
... Hi, all! While I was trying to convert Ensembl ID to Entrez ID using 'mapIDs', I noticed number of missing IDs in the result. 18,453 Ensembl IDs were input, but only 18,364 Entrez IDs were returned. I was expecting the missing IDs would be presented as 'NA' or something like that. Instead, they ...
annotationdbi R mapids written 21 days ago by mbk0asis510
1
vote
1
answer
115
views
1
answers
Answer: C: Tool to design Q-PCR primers with exon skipping?
... Primer3 has an option "Excluded Regions" to skip the regions you want. You can specify the length and positions of the Excluded regions. Read following instruction! > E.g. 401,7 68,3 forbids selection of primers in the 7 bases starting at 401 and the 3 bases at 68. Or mark the source sequence ...
written 10 weeks ago by mbk0asis510
1
vote
1
answer
245
views
1
answers
Comment: C: How to plot 2 different symbols in a 3D PCA plot generated by rgl-plot3D
... I think 'plot3D' and 'plot3d' are different. Former one is a package, while the later is a function. ...
written 10 weeks ago by mbk0asis510
0
votes
0
answers
164
views
0
answers
Comment: C: Looking for the soft that generated this figure
... I'm not sure there is a software for such plots, but I think geom_point (ggplot2) can do the job if you can obtain the data. ...
written 10 weeks ago by mbk0asis510
0
votes
1
answer
246
views
1
answers
Comment: C: Normalizing NGS samples expected to have different total reads
... I found the a sentence, "It has been proposed that quantile normalization can correct for varying DNA enrichment efficiencies." in the MEDIPS vignette. However, this seems different from my case. I think the quantile normalization would be useful when there is difference in sequencing depth over t ...
written 10 weeks ago by mbk0asis510
0
votes
1
answer
246
views
1
answers
Comment: C: Normalizing NGS samples expected to have different total reads
... Thank you for the advice! I will check that out. ...
written 11 weeks ago by mbk0asis510
5
votes
1
answer
246
views
1
answer
Normalizing NGS samples expected to have different total reads
... Hello! I have MBD-seq datasets of Dnmt1 Knock-Out and control cells. As expected, Dnmt1 KO covered very few genomic regions compared to control sample since no Dnmt1 presented in the KO. The problem is that the reads in the KO sample were concentrated in the "few genomic region" made the intensit ...
normalization ngs written 11 weeks ago by mbk0asis510

Latest awards to mbk0asis

Popular Question 21 days ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 8 weeks ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Voter 11 weeks ago, voted more than 100 times.
Great Question 12 weeks ago, created a question with more than 5,000 views. For How to remove a chr from a bam file?
Popular Question 3 months ago, created a question with more than 1,000 views. For Where can I get bovine 'kegg.gs' in R?
Popular Question 4 months ago, created a question with more than 1,000 views. For new line to tab in every second column
Popular Question 5 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 8 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 8 months ago, created a question with more than 1,000 views. For bash for loop with two type of files
Student 8 months ago, asked a question with at least 3 up-votes. For fasta - reverse complement sequence
Popular Question 10 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 11 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 12 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Epic Question 13 months ago, created a question with more than 10,000 views. For Finding a sequence in a fasta file
Great Question 15 months ago, created a question with more than 5,000 views. For fasta - reverse complement sequence
Popular Question 15 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 15 months ago, created a question with more than 1,000 views. For How to find out the mismatch position from MUSCLE or CLUSTALW output?
Popular Question 18 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 18 months ago, created a question with more than 1,000 views. For hclust failed with very large (?) data
Popular Question 18 months ago, created a question with more than 1,000 views. For how to change colors in jitter plots (ggplot2)?
Popular Question 19 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 20 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 21 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Popular Question 22 months ago, created a question with more than 1,000 views. For overlapping texts (plot.PCA in FactoMineR)
Centurion 22 months ago, created 100 posts.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1382 users visited in the last hour