User: mbk0asis

gravatar for mbk0asis
mbk0asis260
Reputation:
260
Status:
Trusted
Location:
Korea, Republic Of
Last seen:
2 hours ago
Joined:
5 years, 6 months ago
Email:
m*******@gmail.com

about me

Posts by mbk0asis

<prev • 87 results • page 1 of 9 • next >
0
votes
1
answer
99
views
1
answers
Comment: C: plotProfile (deepTools) generated a peak on gene body region
... Your second suggestion sounds much easier, haha. Thank you! ...
written 2 hours ago by mbk0asis260
0
votes
1
answer
99
views
1
answers
Comment: C: plotProfile (deepTools) generated a peak on gene body region
... I am stuck at the first step which is ID the outliers. I was going to export the matrix using "–outFileNameMatrix" option and edit the matrix. Then, how can I make the edited file back to the matrix file 'plotHeamap' recognizes? Should I just use other tools like R to draw the heatmap? ...
written 20 hours ago by mbk0asis260
0
votes
1
answer
99
views
1
answers
Comment: C: plotProfile (deepTools) generated a peak on gene body region
... Thank you. I will give it a try. ...
written 3 days ago by mbk0asis260
2
votes
1
answer
124
views
1
answers
Comment: C: samtools rmdup error
... try again after converting the file into bam. ...
written 3 days ago by mbk0asis260
0
votes
1
answer
99
views
1
answer
plotProfile (deepTools) generated a peak on gene body region
... Hi, all! I'm trying to plot the DNA methylation profiles using deepTools and having annoying peaks on the gene body region as you can see the picture below. ![enter image description here][2] The code I used; $ computeMatrix scale-regions -S Sample1.bw Sample2.bw Sample3.bw -R genes.bed -a ...
plotprofile deeptools written 3 days ago by mbk0asis260 • updated 3 days ago by Devon Ryan73k
0
votes
1
answer
139
views
1
answer
Extraction of every n-th and m-th columns
... Hi. Everyone! I have a dataset similar to below. It has multiple samples, and each sample has multiple values. ID Sample1 Sample2 Sample3 xx val1 val2 va3 val4 val5 val1 val2 va3 val4 val5 val1 val2 va3 val4 val5 How can I extract multip ...
command bash written 6 weeks ago by mbk0asis260 • updated 6 weeks ago by Alex Reynolds21k
0
votes
2
answers
477
views
2
answers
Answer: A: TPM to logFC and pvalues
... Try to multiply by 100 or larger numbers to make them integers. ...
written 4 months ago by mbk0asis260
0
votes
3
answers
299
views
3
answers
Answer: A: retrieve Sequence by Gene name?
... You can use one of files in [NCBI gene database ftp][1] site to convert IDs. [1]: ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ ...
written 4 months ago by mbk0asis260
7
votes
0
answers
249
views
0
answers
save plots in for loop
... Hi. I'm trying to read a list of strings and 'grep' them one by one from a data frame and draw and save the plots using R 'for loop' function. However, I got warning message and nor plots. "Warning message: In grep(cpg, colnames(dta)) : argument 'pattern' has length > 1 and only t ...
R grep for loop jpeg written 6 months ago by mbk0asis260
0
votes
0
answers
297
views
0
answers
coxph error : missing value where TRUE/FALSE needed
... Hi, all! I'was playing with a dummy data like below to study survival analysis. > test age status E2 E4 rs4266886 rs61822977 rs6733839 rs10202748 rs115124923 rs115675626 1 65 0 0.63 2.8 0.91 0.92 0.86 0.94 1.19 0.9 2 70 1 0.6 ...
coxph survival analysis written 7 months ago by mbk0asis260 • updated 7 months ago by Santosh Anand3.0k

Latest awards to mbk0asis

Student 3 months ago, asked a question with at least 3 up-votes. For Pairwise2 - Biopython - weird local alignment results
Popular Question 3 months ago, created a question with more than 1,000 views. For fasta - reverse complement sequence
Popular Question 4 months ago, created a question with more than 1,000 views. For fasta - reverse complement sequence
Scholar 5 months ago, created an answer that has been accepted. For A: select DE genes
Popular Question 8 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
Great Question 10 months ago, created a question with more than 5,000 views. For Finding a sequence in a fasta file
Popular Question 10 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
Popular Question 10 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
Popular Question 13 months ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file
Popular Question 16 months ago, created a question with more than 1,000 views. For Pairwise2 - Biopython - weird local alignment results
Popular Question 21 months ago, created a question with more than 1,000 views. For Barcode (index) splitting
Supporter 22 months ago, voted at least 25 times.
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Finding a sequence in a fasta file

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 981 users visited in the last hour