User: ALI Hkz

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ALI Hkz0
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Posts by ALI Hkz

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no input BAM records found in ./tophat_out_SRR5481725/tmp/right_kept_reads.m2g_um.candidates15.bam (possibly due to wrong offset)
... Hi here is my commands and unfortunately i give this error massage in tophat2! tophat2 -p 16 --keep-fasta-order -o ./tophat_out_${NAME}\ --read-mismatches 4\ --read-gap-length 4\ --read-edit-dist 4\ --read-realign-edit-dist 0\ --min-anchor 4\ --splice-mismatch 1\ ...
software error rna-seq written 9 days ago by ALI Hkz0 • updated 9 days ago by Pierre Lindenbaum115k
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Error: Could not find Bowtie 2 index files (splice-mismatch.*.bt2)
... hi i am running tophat2 and bowtie2 , these are my commands and i couldn't get the result: tophat2 -p 16 --keep-fasta-order -o ./tophat_out_${NAME}\ --read-mismatches 4\ --read-gap-length 4\ --read-edit-dist 4\ --read-realign-edit-dist 0\ --min-anchor 4\ -- splice- ...
software error next-gen tophat2 rna-seq sequencing written 10 days ago by ALI Hkz0 • updated 10 days ago by Devon Ryan86k

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