User: ashokkumar.mb

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Posts by ashokkumar.mb

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Need help to solve Standalone blast error
... Can you please send me the link where we can download nr database. because the page from which I have downloaded has only 43 files. all started with nr_v5.00.tar.gz to nr_v5.43.tar.gz. ...
written 7 weeks ago by ashokkumar.mb0
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Need help to solve Standalone blast error
... Hi I am trying run standalone blastn for some of contigs from genome assembly. So i have installed ncbi-blast-2.9.0+ version and downloaded nr database, and then extracted all 43 files. Then tried blastn command, but it says BLAST database error: No alias or index file found for nucleotide databas ...
database error written 7 weeks ago by ashokkumar.mb0 • updated 7 weeks ago by Asaf6.1k
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Forum: (Closed) need to resolve Ubuntu 16.04 booting problem
... hi I have recently updated my workstation from ubuntu 14 to 16.04. After this screen shows "Input Signal Out of Range, Change setting ti 1280x1028-60hz" So I to solve this I modified this command through grub menu `#GRUB_GFXMODE=640x480 to GRUB_GFXMODE=1280x1028`. And then while restarting I have m ...
forum ubuntu 16.04 booting error written 11 weeks ago by ashokkumar.mb0
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Forum: How to know that our trinity denovo assembly is good or not?
... I have used Trinity 2.8.4 to do denovo assembly of my plant RNA seq data. Now I have finished assembly, but how to know that this denovo assembly is really good and what are all the stats I should consider? N50 value is 2865 Total trinity 'genes':72392 Total trinity transcripts: 146848 ...
assembly forum written 8 months ago by ashokkumar.mb0 • updated 8 months ago by lakhujanivijay4.3k
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problem with updating trinity
... hi I have installed trinity v2.6 through conda. but whenever I try to update to trinityv2.8 through conda it says All requested packages already installed its not getting updated to v2.8. I have used `conda update trinity` command to update this. Is there any other way to do this? Please ...
software error tool written 8 months ago by ashokkumar.mb0 • updated 8 months ago by lakhujanivijay4.3k
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Comment: C: Need help to resolve trinity error
... Thank you so much Now its working ...
written 8 months ago by ashokkumar.mb0
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Comment: C: Need help to resolve trinity error
... Thank you so much Now its working ...
written 8 months ago by ashokkumar.mb0
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Need help to resolve trinity error
... I got this error message while trying to trinity Tuesday, November 20, 2018: 18:32:08 CMD: java -Xmx64m -XX:ParallelGCThreads=2 -jar /home/genetics/miniconda3/opt/trinity-2.6.6/util/support_scripts/ExitTester.jar 0 Tuesday, November 20, 2018: 18:32:08 CMD: java -Xmx64m -XX:ParallelGCThrea ...
assembly written 9 months ago by ashokkumar.mb0 • updated 9 months ago by RamRS23k
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Comment: C: Need help to do single denovo assembly with multiple RNA seq data
... Hey thank you so much, Found command for that ...
written 9 months ago by ashokkumar.mb0
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Need help to do single denovo assembly with multiple RNA seq data
... I have illumina RNA seq data from different tissues of one plant. Is it possible to do single assembly using all this RNA seq data from different tissues of one plant? Do I need to combine this libraries before assembly or is there any option in assembly tools itself? Thank you ...
assembly rna-seq written 9 months ago by ashokkumar.mb0 • updated 9 months ago by kristoffer.vittingseerup2.2k

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