User: rania.hamdy1

gravatar for rania.hamdy1
Reputation:
0
Status:
New User
Last seen:
1 day, 19 hours ago
Joined:
7 months ago
Email:
r***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by rania.hamdy1

<prev • 8 results • page 1 of 1 • next >
0
votes
1
answer
889
views
1
answers
Comment: C: bedtools multicov displays only the last BED feature
... I want to count histone modification reads that fall in some predefined regions of a genome using bedtools multicov command i cant understand what BED file refer to How can I know my regions of interest?? on what basis i will create it ? can you help me please? ...
written 26 days ago by rania.hamdy10
0
votes
1
answer
1.3k
views
1
answers
Comment: C: Counting reads within regions of interest
... I want to count histone modification reads that fall in some predefined regions of a genome using bedtools multicov command **i cant understand what BED file refer to How can I know my regions of interest?? on what basis i will create it ? can you help me please?** ...
written 26 days ago by rania.hamdy10
0
votes
1
answer
889
views
1
answers
Answer: A: bedtools multicov displays only the last BED feature
... I want to count histone modification reads that fall in some predefined regions of a genome using bedtools multicov command **i cant understand what BED file refer to** **How can I know my regions of interest?? on what basis i will create it ?** can you help me please? ...
written 26 days ago by rania.hamdy10
0
votes
1
answer
111
views
1
answers
Comment: C: what does the bed file in bedtools multicov command refer to ?
... I am a newbie in bioinformatic researches i can't understand your comment Can you explain more? ...
written 27 days ago by rania.hamdy10
0
votes
1
answer
111
views
1
answers
Comment: C: what does the bed file in bedtools multicov command refer to ?
... i want to reads count histone modification in chip seq file [REMC][1] Dataset [1]: https://egg2.wustl.edu/roadmap/web_portal/processed_data.html#ChipSeq_DNaseSeq ...
written 27 days ago by rania.hamdy10
0
votes
0
answers
93
views
0
answers
Comment: C: Read counts of histone modification ' bam ' file
... hello Sajad I use the same histone modification dataset (REMC) you use i tried to use the same bedtool method (multicov)to read counts of histone modification in my bam file bu i can't understand the bed file part in this method **please can you explain what the bed file you use refer to ??* ...
written 27 days ago by rania.hamdy10
0
votes
1
answer
111
views
1
answer
what does the bed file in bedtools multicov command refer to ?
... Dear bedtools users, Hope everything is well with you I want to use multicov mode to get reads count on my chip seq reads according to beedtools documentation site I've sorted and then indexed the bam file bedtools multicov [OPTIONS] -bams BAM1 BAM2 BAM3 ... BAMn -bed but i don't un ...
beedtols count read multicov chip-seq written 27 days ago by rania.hamdy10 • updated 27 days ago by ATpoint17k
0
votes
5
answers
532
views
5
answers
Comment: C: Extract start coordinate from read 1 and end coordinate from read 2 of paired en
... Hello Could you please explain what 60 and - or + stand for ? ...
written 7 months ago by rania.hamdy10

Latest awards to rania.hamdy1

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 930 users visited in the last hour