User: yusuf

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yusuf10
Reputation:
10
Status:
New User
Location:
Norway INN
Last seen:
3 weeks, 3 days ago
Joined:
9 months ago
Email:
y********@gmail.com

Posts by yusuf

<prev • 12 results • page 1 of 2 • next >
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Comment: C: plot error x y length difference
... yup tried didn't work, but made the matrix again and it worked. ...
written 27 days ago by yusuf10
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Comment: C: plot error x y length difference
... it worked thanks :) ...
written 27 days ago by yusuf10
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Comment: C: plot error x y length difference
... yes > head(m3) geneid FP13w0L.x FP20w0L.x FP27w0L.x FP39w0R.x FP46w0R.x FP7w0L.x FP13w0L.y 1: ENSG00000000003 5.832952 5.702980 5.890075 5.429769 6.197564 5.405774 6.093247 2: ENSG00000000005 0.000000 4.092157 2.959349 2.626327 1.978803 2.13386 ...
written 27 days ago by yusuf10 • updated 27 days ago by RamRS23k
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Answer: A: plot error x y length difference
... Hi thankyou for your reply I want to plot SD of two groups of files, with different length I have slightly solved this by Y2 <- as.data.table((log.norm.counts.a[,1:6]), keep.rownames = "geneid") X2 <- as.data.table((log.norm.counts.b[,1:6]), keep.rownames = "geneid") m3 <- m ...
written 27 days ago by yusuf10 • updated 27 days ago by RamRS23k
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plot error x y length difference
... I have used this command plot(log.norm.counts.a[,1:2], cex=.1) but it gives following error Error in xy.coords(x, y, xlabel, ylabel, log) : 'x' and 'y' lengths differ I can't make changes in the file. anyone know how to solve, like skip ids which are missing. ...
ggplot rna-seq written 28 days ago by yusuf10 • updated 27 days ago by kashiff00770
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Comment: C: rnaseqcomp for own data withoutref genes
... thank you for your comments. I have seen many articles and found rsem is a better tool, I just want to see the difference in my data. I found a tool rnaseqcomp but it comes with the incomplete manual. after that, I also want to compare common and specific DE genes of the tools Lpacther I think ...
written 4 weeks ago by yusuf10
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rnaseqcomp for own data withoutref genes
... Hi, Can anyone guide me on how to use rnaseqcomp for own data when we don't have reference genes https://bioconductor.org/packages/release/bioc/vignettes/rnaseqcomp/inst/doc/rnaseqcomp.pdf I am comparing kallisto and rsem - quantificationtool comparision. ...
quantificaion comparision rna-seq rnaseqcomp written 4 weeks ago by yusuf10
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Comment: C: comparing kallisto rsem , makind sd plot and corelation table /graph
... hi thank you for your comment. I hve used this manual. i have xountmatri of kallisto and rsem< also i have deseq2 and edger results from kallisto and rsem, i want to plot sd of rsem and kallisto and neplot followed by correlation plot. ...
written 4 weeks ago by yusuf10
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comparing kallisto rsem , makind sd plot and corelation table /graph
... Hi, I have count table from kallisto and rsem i want to compare them , need suggestions for it. #metafile meta #kallisto count table txi.kallisto #rsem count table txi.rsem #DE deseq2 dds.k res.k dds.r res.r #DE edgeR etable.k etable.r I don't have reference genes to normalize I am ...
rsem deseq2 kallisto edger rnaseqcomp written 4 weeks ago by yusuf10 • updated 4 weeks ago by WouterDeCoster40k
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Comment: C: How to compare kallisto and stringtie output
... Thank you. it was helpful. ...
written 9 months ago by yusuf10

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