User: Baby Bioinformatician

Reputation:
60
Status:
New User
Location:
Moscow
Last seen:
2 weeks, 2 days ago
Joined:
11 months, 1 week ago
Email:
e**********@gmail.com

I am an MSc. Life Science student, exploring a career path in Bioinformatics. I am a starter in this field but working aggressively hard to join the league of guys who know what they are doing in this field.

Posts by Baby Bioinformatician

<prev • 10 results • page 1 of 1 • next >
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Comparative genomic analysis
... Hi Biostars, Am conducting a comparative genomic analysis of some metabolic pathway in bacteria. I have so far been using blast to identify orthologous genes in different genomes. However, I would also like to study genomic context of genes in order to be able to fill some missing genes in the pathw ...
genome comparative genomics tool written 10 weeks ago by Baby Bioinformatician60 • updated 18 days ago by mehmadi0
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Calculating GC content of all CpG islands
... Hi Biostars, I have two files containing the genomic ranges of all CpG islands and promoter sequences of Human genome hg19. I would like to do an association test between CpG islands and promoters. So I need to calculate the GC contents of the two files. However, I am not conversant working with ge ...
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Forum: Poorly designed "omics" experiment
... Hi Biostars, Am trying to figure out what can go wrong in the design of omics based studies. Could you please share with me any links to articles in which the authors used an "omics" approach but the study was wrongly designed and hence probably came up with wrong conclusions. Thanks. ...
forum next-gen chip-seq rna-seq written 6 months ago by Baby Bioinformatician60
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Answer: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... A huge metagenomics project in my Lab failed just because my boss refused to employ a bioinformatician. Of course I didn't know anything in bioinformatics apart from the word itself, so I couldn't save the project. Then I decided, even if it means life or death, am gonna settle down and learn bio ...
written 6 months ago by Baby Bioinformatician60
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Comment: C: awk command to extract deletions from a CIGAR string
... Thank you very much for this quick and timely response. ...
written 7 months ago by Baby Bioinformatician60
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Comment: C: awk command to extract deletions from a CIGAR string
... Thank you very much. That was really quick and timely. ...
written 7 months ago by Baby Bioinformatician60
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awk command to extract deletions from a CIGAR string
... Hi Biostars, I am reanalyzing some RNA-seq data and would like to identify reads with the longest deletions. I have extracted the CIGAR strings containing deletions from column 6 of my SAM files. However, I have a huge list of reads and I don't want to count the number of deletions by eyeballing thr ...
alignment rna-seq written 7 months ago by Baby Bioinformatician60 • updated 7 months ago by Pierre Lindenbaum123k
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Comment: C: Biostar Bioinformatics textbooks
... Thanks. I need to buy this book to style up my Bioinformatics. ...
written 10 months ago by Baby Bioinformatician60
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Biostar Bioinformatics textbooks
... Hey guys, I would like to buy the "Biostar Bioinformatics Text" but I see as if it has three versions. I would like to know, what makes them different? And if I buy the cheapest, would I miss so much? ...
next-gen written 10 months ago by Baby Bioinformatician60 • updated 10 months ago by genomax73k
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commandlines and sequences
... Which command can I use to grab the first 10 nucleotides in each line of my nucleotide sequence in a file? ...
sequence written 11 months ago by Baby Bioinformatician60 • updated 11 months ago by genomax73k

Latest awards to Baby Bioinformatician

Teacher 6 months ago, created an answer with at least 3 up-votes. For A: The Biostar Handbook. A bioinformatics e-book for beginners.
Autobiographer 7 months ago, has more than 80 characters in the information field of the user's profile.

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