User: Nan

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Nan0
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Posts by Nan

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Comment: C: Scaled gene expression data and produced negative value
... rowScales(data) - Very simple code. ...
written 12 days ago by Nan0
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Scaled gene expression data and produced negative value
... Hi, I have a data table of gene expression which contains TPM value. So here I try to do a heatmap plot. So I scale by gene level at first and produce negative value. So why negative values comes up? ...
gene R rna-seq written 12 days ago by Nan0
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Comment: C: DEseq results -- foldchange is 0/inf
... Yes, this is a way to avoid 0/inf values. But I was worried if it is biologically reasonable? ...
written 18 months ago by Nan0
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DEseq results -- foldchange is 0/inf
... So after feature counts of RNA-seq bam file, I have an count file. I input the count file into DEseq, and got results which contain foldchange values such as 0/inf/NA, so how can I deal with these values when I want to use foldchange to filter out most up-/down- regulated genes? So for `foldchange ...
deseq rna-seq written 18 months ago by Nan0 • updated 18 months ago by Chirag Parsania1.9k

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