User: Dr.Animo

gravatar for Dr.Animo
Dr.Animo10
Reputation:
10
Status:
New User
Location:
Pakistan/Islamabad/COMSATS
Last seen:
4 days, 16 hours ago
Joined:
1 year, 1 month ago
Email:
m******@gmail.com

I am doing MS in Bioinformatics from COMSATS Islamabad. I have an interest in comparative genomics, metagenomics and sRNA identification by using in-silico methods. I have also some experience in these fields. I have also some experience in homology modeling of protein, motif analysis and data mining from the databases like NCBI, Ensembl and UCSC genome browser. 

Posts by Dr.Animo

<prev • 7 results • page 1 of 1 • next >
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Comment: A: EdgeR Warning message In estimateCommonDisp.
... Thanks for the response. I've fixed it the problem is due to `expt` ...
written 4 days ago by Dr.Animo10
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EdgeR Warning message In estimateCommonDisp.
... Hi everyone, I am trying to perform DEG analysis. I've two samples each has 3 replicates (one is XR and other is YR) replicates are XR1,XR2,XR3 and YR1,YR2,YR3.. d<- DGEList(counts=as.matrix(raw.data[,2:7]), lib.size=library.sizes, group=expt) d<- calcNormFactors(d) At the following ...
R rna-seq edger deg written 4 days ago by Dr.Animo10
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Comment: C: viral genome assembly
... What about `V-GAP` assembly pipeline? https://www.sciencedirect.com/science/article/pii/S0378111915012378 I could not find the pipeline that proposes the author in the article. If someone has this then please share it. ...
written 6 weeks ago by Dr.Animo10
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Comment: C: viral genome assembly
... I could not find any major difference by applying `mindepth` ...
written 6 weeks ago by Dr.Animo10
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Comment: C: viral genome assembly
... I've already assembled the reads with tadpole, the number of contigs decreased but they are very high. mindepth=X What is X here? ...
written 6 weeks ago by Dr.Animo10
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viral genome assembly
... Dear all, I am trying to assemble a phage (virus) genome. I've checked the quality of the reads and mapped them to the host genome to remove the host genome reads. Now I am trying to assemble the unmapped reads but the number of contigs is more than 1000. I have tried different kmer sizes and differ ...
chimeric reads assembly virus genome written 6 weeks ago by Dr.Animo10 • updated 6 weeks ago by Mensur Dlakic2.9k
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unicycler assembly parameters
... Hi, I want to assemble the illumina reads by using unicycler. So, what parameters should I set for better assembly. I ran a example reads, which are alredy assemble. I want to compare the results. I set the default parameters, but the difference between result is very large. So, can you help me? 1. ...
assembly written 13 months ago by Dr.Animo10

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Autobiographer 13 months ago, has more than 80 characters in the information field of the user's profile.

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