User: LLili

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LLili0
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Posts by LLili

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Comment: C: RepeatModeler nseg installation problem
... also no response on GitHub https://github.com/rmhubley/RepeatModeler/issues/32 ...
written 9 days ago by LLili0
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Comment: C: RepeatModeler nseg installation problem
... a similar question was asked and never solved in https://www.biostars.org/p/368150/#374487 ...
written 13 days ago by LLili0
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Comment: A: Alternatives to RepeatModeler / nseg install fail
... I am facing the same problem, did you managed to solve this ? ...
written 13 days ago by LLili0
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RepeatModeler nseg installation problem
... Hi, I am trying to install nseg in my computer so I can use RepeatModeler but this is not working. I have a folder called nseg in my computer with 7 files in it: genwin.c genwin.h lnfac.h makefile nmerge.c nseg.c runnseg When I typed **make** the result is: ....... 36 warnings and 11 errors gene ...
installation nseg repeatmodeler written 13 days ago by LLili0
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Comment: C: bowtie reported reads and aligned reads number doesn't match
... yes, if I remove all filters the numbers are now equal but I don't know what does this means still. >> reads processed: 14500699 >> reads with at least one reported alignment: 11896128 (82.04%) >> reads that failed to align: 2604571 (17.96%) >>Reported 11896128 alignment ...
written 4 months ago by LLili0
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Comment: C: bowtie reported reads and aligned reads number doesn't match
... Its a small RNA seq experiment from crustacean embryos. I used >> bowtie build file.fa INDEX_name for the index I am using bowtie version 1.1.2. My colleague is also using bowtie 1. The command line was the same just -v 1. Thanks for all the help ! ...
written 4 months ago by LLili0
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Comment: C: bowtie reported reads and aligned reads number doesn't match
... posts: - http://seqanswers.com/forums/showthread.php?t=6351 - http://seqanswers.com/forums/showthread.php?t=35519 - https://www.biostars.org/p/48629/ - https://www.biostars.org/p/48629/ Also someone in my lab tried the same with one of their datasets (also single end reads) and their results loo ...
written 4 months ago by LLili0 • updated 4 months ago by finswimmer11k
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Comment: C: bowtie reported reads and aligned reads number doesn't match
... yes, I checked that but the last number (301564237) is way bigger than the processed reads and I don't understand where it come from. In all the other post I have seen the two numbers in bold are exactly the same. ...
written 4 months ago by LLili0
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bowtie reported reads and aligned reads number doesn't match
... Hi, I have been trying to run bowtie on several libraries and every time I check my results I realized the number of reads with at least one reported alignment and the number of reported alignments to 1 output stream(s) doesn’t match and I don't understand why. I use the following command: >& ...
bowtie written 4 months ago by LLili0 • updated 4 months ago by Bastien Hervé4.0k

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