User: Bolesaem

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Bolesaem0
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Posts by Bolesaem

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Venn diagram generation criteria from RNAseq data
... I have a general question regarding the type of data to be used for generation of the Venn diagram: would it make sense to use the genes identified via Gene Ontology? Or should I always go back to the DESeq2 comparisons? Because I have several comparisons being done AvsB and BvsA, or AvsC and CvsA, ...
venn diagram gene ontology criteria rna-seq written 4 days ago by Bolesaem0 • updated 4 days ago by shawn.w.foley140
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Answer: A: Creating a Venn diagram from RNA seq data
... I have a general question regarding the type of data to be used for generation of the Venn diagram: would it make sense to use the genes identified via Gene Ontology? I have several comparisons being done AvsB and BvsA, or AvsC and CvsA, and BvsC and CvsB. Could the gene list from these comparisons ...
written 4 days ago by Bolesaem0
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Comment: A: Creating a Venn diagram from RNA seq data
... I have a general question regarding the type of data to be used for generation of the Venn diagram: would it make sense to use the genes identified via Gene Ontology? I have several comparisons being done AvsB and BvsA, or AvsC and CvsA, and BvsC and CvsB. Could the gene list from these comparison ...
written 4 days ago by Bolesaem0
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Comment: C: Creating a Venn diagram from RNA seq data
... OK! Yes all samples were analyzed with DESeq2 prior to the analysis! ...
written 5 days ago by Bolesaem0
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Comment: C: Creating a Venn diagram from RNA seq data
... What do you exactly mean with finding the "same method"? Well the idea would be to identify a footprint or a molecular signature for each condition, and then compare it between each other to understand how similar they are. ...
written 5 days ago by Bolesaem0
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Comment: C: Creating a Venn diagram from RNA seq data
... Thank you so much! This is actually what I was struggling with (again, I have really basic questions...). About the criteria for selecting gene IDs, I think this is key in order to have useful information. I would like to understand how similar the different samples are to each other. It's about d ...
written 6 days ago by Bolesaem0
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Comment: C: Creating a Venn diagram from RNA seq data
... Ok sorry I realized my question wasn't very clear. I would like to know how many genes are commonly or differentially expressed in different treatments (it's about stem cell biology, I would like to show how similar are two different developmental stages). So I thought of a Venn diagram. I have se ...
written 6 days ago by Bolesaem0
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Creating a Venn diagram from RNA seq data
... First post here. Hello everyone! This is the first time I have to use bioinformatics, so I apologize but this is going to be a very basic question. I would like to create a Venn diagram to see which genes are commonly expressed between two or three treatments. I have the excel sheets with p values ...
basic venn rna-seq diagram written 6 days ago by Bolesaem0

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