User: reece

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reece0
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Posts by reece

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Answer: A: Bedtools Merge .bed file with unique ID column
... Figured it out this seems to have worked: bedtools merge -i test.bed -d 500 -c 4 -o collapse ...
written 8 weeks ago by reece0 • updated 8 weeks ago by ATpoint13k
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Bedtools Merge .bed file with unique ID column
... Hello, I have added a unique ID column (as shown below) to my .bed file so I can identify merged elements after merging has occurred. chr4 132181662 132181672 HG00365_1k chr4 132181662 132181672 HG00368_1k chr4 132181662 132181672 HG00369_1k chr4 132181662 132181672 HG00371_1k A ...
bedtools .bed written 8 weeks ago by reece0 • updated 8 weeks ago by ATpoint13k
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Comment: C: 'Error: Unable to open file test1.bed. Exiting' , Bedtools help
... I didn't realise this, I will give it a go. Thank you! Edit - Unfortunately still no joy, grateful for the help though ...
written 10 weeks ago by reece0
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Comment: C: 'Error: Unable to open file test1.bed. Exiting' , Bedtools help
... Hi, I've just checked and I believe the input to be correct and I am running as administrator. Do I need to store the .bed file anywhere specifically for it to work? Thank you for the feedback! ...
written 10 weeks ago by reece0
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'Error: Unable to open file test1.bed. Exiting' , Bedtools help
... Hi everyone, I am very new to all of this so I apologise for any simple mistakes. Today I have been trying to merge 2 files at 500bp using Bedtools. I have both files in the format of: chr1 812283 812293 chr1 812566 812576 chr1 811236 811246 As far as I'm aware each column is separate ...
bedtools .bed mergebed written 10 weeks ago by reece0 • updated 10 weeks ago by ATpoint13k

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Scholar 8 weeks ago, created an answer that has been accepted. For A: Bedtools Merge .bed file with unique ID column

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